JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TM9SF3_chr10_96513110_96592012	0/0	t0002	4332	73	9	16	40	1	7	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0003	4333	61	8	14	30	3	6	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0004	4336	15	4	3	2	1	5	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0005	4335	15	15	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0006	4335	7	6	0	0	0	1	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0007	4332	6	0	0	6	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0008	4333	6	6	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0009	4334	5	5	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0010	4333	5	5	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0011	4332	4	0	0	4	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0012	4335	3	3	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0013	4332	3	0	1	1	1	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0014	4336	3	3	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0015	4335	2	2	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	1/0	t0016	4331	2	1	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0017	4333	2	2	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0018	4333	2	0	0	2	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0019	4332	1	1	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0020	4335	1	1	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0021	4335	1	0	1	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0022	4318	1	0	0	1	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0023	4069	1	0	1	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0024	4327	1	0	0	1	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0025	4332	1	0	0	1	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0026	4332	1	0	0	0	0	1	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0027	4332	1	1	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0028	4332	1	0	1	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0029	4332	1	0	0	1	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0030	4332	1	0	0	1	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0031	4333	1	0	0	1	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0032	4336	1	0	0	0	1	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0033	4334	1	1	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0034	4334	1	1	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0035	4335	1	1	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0036	4336	1	1	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0037	4333	1	1	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0038	4333	1	0	0	1	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	t0039	4333	1	1	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF4_chr20_32104714_32172256	0/1	t0001	1840	194	45	33	94	7	14	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	1/0	t0002	1840	43	8	18	1	4	11	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0003	1840	24	22	2	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0004	1840	6	6	0	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0005	1840	6	1	0	5	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0006	1841	5	4	1	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0007	1840	4	3	1	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0008	1840	4	0	2	0	1	1	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0009	1840	3	0	3	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0010	1840	2	1	1	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0011	1865	1	0	0	1	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0012	1840	1	1	0	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256