JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TM9SF4_chr20_32104714_32172256	0/0	t0013	1840	1	0	0	1	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0014	1840	1	1	0	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0015	1840	1	1	0	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0016	1840	1	1	0	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	t0017	1841	1	0	1	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TMA16_chr4_163489690_163525539	1/0	t0001	1138	200	49	24	94	4	28	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/1	t0002	1138	133	18	32	67	8	7	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	t0003	1139	52	6	2	37	0	7	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	t0004	1139	9	1	2	5	1	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	t0005	1137	7	6	1	0	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	t0006	1138	7	0	4	0	3	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	t0007	1138	6	6	0	0	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	t0008	1138	2	0	0	0	0	2	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	t0009	1138	2	2	0	0	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	t0010	1137	1	1	0	0	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	t0011	1138	1	1	0	0	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	t0012	1138	1	0	0	1	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	t0013	1138	1	0	1	0	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA7B_chr22_39955397_39969905	0/1	t0001	1315	161	32	44	64	8	12	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	1/0	t0002	1315	138	5	23	91	5	13	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0003	1319	49	20	10	1	3	15	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0004	1318	42	23	4	11	0	4	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0005	1316	6	1	0	5	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0006	1314	5	2	0	3	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0007	1316	5	0	0	5	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0008	1319	5	4	1	0	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0009	1315	4	4	0	0	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0010	1318	3	0	0	3	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0011	1314	3	0	0	2	0	1	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0012	1315	2	0	0	2	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0013	1318	1	1	0	0	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0014	1315	1	1	0	0	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0015	1318	1	0	0	0	0	1	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0016	1315	1	1	0	0	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	t0017	1315	1	0	0	1	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7_chr3_48435257_48449208	0/0	t0001	367	252	67	44	101	12	28	copy fasta	TMA7	chr3	48435257	48449208
TMA7_chr3_48435257_48449208	0/0	t0002	367	134	18	28	74	4	10	copy fasta	TMA7	chr3	48435257	48449208
TMA7_chr3_48435257_48449208	0/0	t0003	367	2	2	0	0	0	0	copy fasta	TMA7	chr3	48435257	48449208
TMA7_chr3_48435257_48449208	0/0	t0004	367	1	1	0	0	0	0	copy fasta	TMA7	chr3	48435257	48449208
TMA7_chr3_48435257_48449208	0/0	t0005	367	1	0	0	1	0	0	copy fasta	TMA7	chr3	48435257	48449208
TMBIM1_chr2_218269197_218297503	0/0	t0001	1357	143	7	36	75	6	19	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/1	t0002	1357	94	14	15	44	7	13	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0003	1357	43	36	4	1	2	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	1/0	t0004	1357	17	16	0	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0005	1357	16	0	5	11	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0006	1357	15	0	9	6	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0007	1357	9	8	1	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0008	1357	3	3	0	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0009	1353	3	0	0	3	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0010	1357	2	2	0	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503