JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMBIM1_chr2_218269197_218297503	0/0	t0011	1357	2	0	0	0	0	2	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0012	1357	2	0	0	2	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0013	1357	1	0	1	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0014	1357	1	0	0	0	1	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0015	1357	1	0	0	1	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0016	1357	1	0	0	1	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0017	1357	1	1	0	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0018	1357	1	0	1	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	t0019	1357	1	1	0	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM4_chr12_66130846_66174996	0/0	t0001	1904	102	14	12	59	4	13	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0002	1909	69	2	3	59	0	5	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0003	2163	35	3	12	6	5	9	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0004	2163	23	8	9	0	4	2	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0005	1909	17	17	0	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0006	2164	15	3	4	4	0	4	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0007	1909	12	11	1	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0008	2162	11	0	5	5	1	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0009	2162	8	5	1	0	1	1	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0010	2160	7	5	1	0	1	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0011	2160	4	0	1	2	0	1	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0012	1900	4	4	0	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0013	2164	3	0	3	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0014	1905	3	0	0	3	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0015	1909	3	0	0	3	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0016	2161	3	3	0	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0017	2161	3	0	1	1	0	1	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0018	2164	3	0	0	2	0	1	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0019	1903	3	0	2	1	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0020	1909	2	2	0	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0021	2163	2	0	1	0	0	1	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0022	1909	2	2	0	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0023	1904	2	1	1	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/1	t0024	2162	2	0	1	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0025	2160	1	0	1	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0026	2160	1	0	0	0	0	1	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0027	1909	1	1	0	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0028	1908	1	0	0	1	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0029	2162	1	0	1	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0030	2163	1	1	0	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0031	1907	1	0	0	1	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0032	1907	1	0	0	1	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0033	1904	1	1	0	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0034	1904	1	1	0	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0035	1532	1	0	1	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	1/0	t0036	2160	1	0	0	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0037	2164	1	0	0	0	0	1	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	t0038	2161	1	0	1	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM6_chr12_49736557_49769934	1/1	t0001	2124	182	27	41	87	7	18	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0002	2131	23	13	4	3	1	2	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0003	2122	13	1	2	9	1	0	copy fasta	TMBIM6	chr12	49736557	49769934