Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRIP1_chr17_61674139_61868528	0/0	t0046	4433	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0047	4433	1	0	0	0	0	1	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0048	4440	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0049	4439	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0050	4432	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0051	4434	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0052	4432	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0053	4433	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0054	4432	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0055	4433	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0056	4433	1	0	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/1	t0057	4432	1	0	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0058	4434	1	0	0	0	0	1	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0059	4440	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0060	4434	1	0	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0061	4439	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0062	4434	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0063	4433	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0064	4433	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIX1_chr5_34910711_34930996	1/1	t0001	530	437	93	82	198	18	44	copy fasta	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	t0002	530	2	0	0	2	0	0	copy fasta	BRIX1	chr5	34910711	34930996
BRIX1_chr5_34910711_34930996	0/0	t0003	530	1	1	0	0	0	0	copy fasta	BRIX1	chr5	34910711	34930996
BRK1_chr3_10110675_10132190	1/1	t0001	923	273	43	57	125	11	35	copy fasta	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	t0002	923	52	34	12	1	3	2	copy fasta	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	t0003	923	14	14	0	0	0	0	copy fasta	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	t0004	923	9	1	2	3	0	3	copy fasta	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	t0005	923	4	0	0	3	0	1	copy fasta	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	t0006	923	1	0	1	0	0	0	copy fasta	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	t0007	923	1	0	0	0	0	1	copy fasta	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	t0008	923	1	1	0	0	0	0	copy fasta	BRK1	chr3	10110675	10132190
BRK1_chr3_10110675_10132190	0/0	t0009	923	1	1	0	0	0	0	copy fasta	BRK1	chr3	10110675	10132190
BRME1_chr19_13877348_13911117	0/0	t0001	879	162	10	31	80	13	28	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0002	879	123	47	14	48	4	10	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0003	879	11	10	1	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0004	879	7	7	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0005	879	4	4	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0006	879	3	1	1	0	0	1	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0007	879	2	2	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0008	879	2	2	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0009	879	2	2	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0010	879	1	0	0	1	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0011	879	1	0	1	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0012	879	1	0	0	0	0	1	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0013	879	1	0	0	0	1	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0014	879	1	0	0	1	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRME1_chr19_13877348_13911117	0/0	t0015	879	1	1	0	0	0	0	copy fasta	BRME1	chr19	13877348	13911117
BRMS1L_chr14_35821338_35876963	1/1	t0001	1666	352	77	42	175	8	48	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1L_chr14_35821338_35876963	0/0	t0002	1666	6	5	1	0	0	0	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1L_chr14_35821338_35876963	0/0	t0003	1666	6	6	0	0	0	0	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1L_chr14_35821338_35876963	0/0	t0004	1666	2	0	2	0	0	0	copy fasta	BRMS1L	chr14	35821338	35876963