JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMBIM6_chr12_49736557_49769934	0/0	t0004	2124	11	0	0	10	0	1	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0005	2124	11	0	9	2	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0006	2127	10	10	0	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0007	2135	7	6	1	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0008	2131	5	4	1	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0009	2122	5	4	1	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0010	2123	5	0	0	5	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0011	2124	4	0	0	4	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0012	2126	3	2	0	1	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0013	2126	3	3	0	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0014	2123	3	0	0	1	0	2	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0015	2126	2	2	0	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0016	2123	2	0	0	2	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0017	2122	2	0	0	2	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0018	2133	1	1	0	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0019	2126	1	1	0	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0020	2126	1	1	0	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0021	2126	1	1	0	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0022	2124	1	0	1	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0023	2124	1	1	0	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0024	2124	1	0	0	0	0	1	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0025	2124	1	0	0	0	1	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0026	2124	1	0	0	1	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0027	2124	1	0	0	0	1	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0028	2124	1	1	0	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0029	2124	1	0	0	0	1	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	t0030	2123	1	0	0	1	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMC1_chr9_72516608_72843297	0/0	t0001	3058	55	11	11	26	1	6	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	1/0	t0002	3058	46	4	11	25	0	5	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0003	3058	11	9	2	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/1	t0004	3058	7	4	1	0	1	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0005	3058	6	0	6	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0006	3058	6	6	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0007	3058	5	4	1	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0008	3058	4	0	3	0	1	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0009	3058	4	4	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0010	3058	3	0	0	2	0	1	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0011	3058	3	1	0	0	0	2	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0012	3059	3	1	1	0	1	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0013	3058	2	2	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0014	3058	2	2	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0015	3058	2	0	0	1	0	1	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0016	3059	2	0	0	2	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0017	3058	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0018	3058	1	0	1	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0019	3059	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0020	3058	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0021	3059	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0022	3058	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0023	3058	1	0	1	0	0	0	copy fasta	TMC1	chr9	72516608	72843297