JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMC1_chr9_72516608_72843297	0/0	t0024	3058	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0025	3058	1	0	0	1	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0026	3058	1	0	0	0	0	1	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0027	3058	1	0	1	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0028	3058	1	0	1	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0029	3058	1	0	0	1	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0030	3059	1	0	0	0	1	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0031	3059	1	0	1	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0032	3058	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0033	3058	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0034	3059	1	0	1	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0035	3058	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0036	3058	1	0	0	0	1	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	t0037	3059	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC2_chr20_2531573_2648580	0/1	t0001	2273	133	9	25	70	9	19	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	1/0	t0002	2279	70	24	11	26	5	3	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0003	2273	54	3	5	39	1	6	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0004	2273	22	18	4	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0005	2279	15	0	7	2	0	6	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0006	2279	8	7	1	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0007	2270	7	3	1	0	1	2	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0008	2279	6	5	1	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0009	2273	4	0	0	4	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0010	2273	3	3	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0011	2273	2	0	0	0	0	2	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0012	2273	2	2	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0013	2279	2	0	0	2	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0014	2273	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0015	2273	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0016	2273	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0017	2273	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0018	2279	1	0	1	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0019	2273	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0020	2279	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0021	2273	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0022	2273	1	0	0	1	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0023	2273	1	0	1	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0024	2279	1	0	0	1	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0025	1430	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0026	2279	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0027	2279	1	0	1	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0028	2279	1	0	0	1	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	t0029	2279	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC3_chr15_81326088_81379213	0/1	t0001	1468	140	17	29	74	9	10	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	1/0	t0002	1468	132	22	19	71	3	16	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	t0003	1467	53	31	6	14	2	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	t0004	1468	37	9	2	25	0	1	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	t0005	1467	12	10	2	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	t0006	1468	5	4	1	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	t0007	1430	4	4	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213