JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMC3_chr15_81326088_81379213	0/0	t0008	1468	2	0	1	0	0	1	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	t0009	1468	2	0	0	2	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	t0010	1467	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	t0011	1467	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	t0012	1467	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC4_chr19_54155108_54178160	0/0	t0001	241	256	56	57	110	11	22	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/1	t0002	242	147	38	25	52	7	24	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	t0003	241	4	4	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC5_chr16_19412883_19504113	0/1	t0001	1663	89	12	15	38	2	21	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0002	1667	63	4	15	42	0	2	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	1/0	t0003	1665	45	6	11	22	1	4	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0004	1663	27	21	5	0	1	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0005	1663	19	1	6	9	2	1	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0006	1663	14	0	0	14	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0007	1666	14	9	1	4	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0008	1667	10	10	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0009	1667	9	7	2	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0010	1665	5	0	0	5	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0011	1663	5	5	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0012	1667	5	1	1	1	1	1	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0013	1667	4	4	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0014	1663	3	3	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0015	1667	3	0	2	0	1	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0016	1666	3	3	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0017	1662	3	3	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0018	1663	2	0	2	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0019	1662	2	1	0	1	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0020	1663	2	2	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0021	1665	1	0	0	1	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0022	1667	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0023	1667	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0024	1667	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0025	1663	1	0	0	1	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0026	1663	1	0	0	0	0	1	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0027	1667	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0028	1664	1	0	0	1	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	t0029	1665	1	0	0	1	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC6_chr17_78102397_78133755	1/0	t0001	5970	120	6	30	57	10	16	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0002	5971	65	18	15	19	4	9	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0003	5970	57	4	15	31	1	6	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0004	6108	23	4	0	15	0	4	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0005	5985	20	1	2	17	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0006	5971	9	1	2	4	0	2	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0007	6095	9	9	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0008	5986	6	2	0	4	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0009	5971	6	6	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0010	6109	5	4	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0011	6108	5	3	2	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0012	5985	5	1	0	4	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0013	6096	4	4	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755