JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMC6_chr17_78102397_78133755	0/0	t0064	6094	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0065	6093	1	0	0	0	1	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0066	6108	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0067	6094	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0068	6109	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0069	5970	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0070	5970	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0071	5970	1	0	0	0	0	1	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0072	5970	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0073	5970	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0074	5970	1	0	0	0	0	1	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0075	5970	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0076	5970	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0077	5970	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0078	5970	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0079	5970	1	0	1	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0080	5970	1	0	1	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0081	5970	1	0	1	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0082	5970	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0083	6094	1	0	0	0	0	1	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0084	5970	1	0	1	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0085	6850	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0086	5970	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0087	5970	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0088	6094	1	0	0	0	0	1	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0089	5970	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	t0090	5970	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC7_chr16_18978934_19068942	0/1	t0001	2230	83	24	22	20	4	12	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0002	2232	83	2	20	41	6	14	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	1/0	t0003	2230	33	20	2	7	0	3	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0004	2234	18	0	4	12	0	2	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0005	2228	6	0	5	0	0	1	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0006	2232	6	6	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0007	2235	4	4	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0008	2230	4	4	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0009	2234	4	2	0	0	0	2	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0010	2239	3	3	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0011	2234	3	1	0	1	0	1	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0012	2232	3	0	0	3	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0013	2239	2	2	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0014	2236	2	0	0	2	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0015	2232	2	2	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0016	2238	2	2	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0017	2236	2	1	1	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0018	2238	2	1	1	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0019	2232	2	2	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0020	2232	1	0	0	1	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0021	2242	1	1	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0022	2239	1	1	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0023	2241	1	1	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942