JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMC7_chr16_18978934_19068942	0/0	t0024	2241	1	1	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0025	2239	1	1	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0026	2233	1	0	1	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0027	2234	1	0	0	1	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0028	2230	1	1	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0029	2232	1	0	0	1	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0030	2230	1	0	0	1	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0031	2232	1	1	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0032	2230	1	1	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0033	2230	1	0	0	0	0	1	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0034	2236	1	0	1	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0035	2232	1	0	0	1	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0036	2232	1	0	1	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	t0037	2232	1	0	0	1	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC8_chr17_78125771_78147968	0/0	t0001	2246	75	19	21	16	5	14	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0002	2246	66	4	4	52	0	6	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/1	t0003	2246	65	12	8	33	4	7	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0004	2242	54	2	16	35	1	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0005	2246	50	7	12	24	2	5	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0006	2246	28	1	6	16	2	3	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0007	2242	15	15	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0008	2246	15	0	0	12	0	3	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0009	2242	10	4	3	3	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0010	2246	9	7	2	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0011	2246	7	2	0	1	0	4	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0012	2246	5	2	2	1	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0013	2246	4	4	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0014	2246	4	0	3	0	1	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0015	2246	4	0	1	0	1	2	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0016	2242	4	4	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0017	2246	4	4	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0018	2246	3	1	1	0	1	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0019	2246	3	0	0	1	1	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0020	2246	3	0	0	3	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0021	2246	2	0	2	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0022	2243	2	2	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0023	2246	2	2	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0024	2246	2	0	0	2	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0025	2246	1	0	0	1	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0026	2246	1	1	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0027	2246	1	0	1	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0028	2246	1	0	1	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0029	2246	1	0	0	0	0	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0030	2246	1	0	0	0	0	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0031	2246	1	1	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0032	2246	1	0	0	0	0	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0033	2246	1	0	0	1	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0034	2246	1	0	0	0	0	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0035	2246	1	0	0	0	0	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0036	2242	1	1	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968