JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMC8_chr17_78125771_78147968	0/0	t0037	2242	1	1	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0038	2229	1	0	0	1	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0039	2246	1	0	1	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0040	2246	1	1	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	t0041	2246	1	1	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	1/0	t0042	2246	1	0	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMCC1_chr3_129642792_129898711	0/1	t0001	4342	68	4	12	34	5	12	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0002	4341	47	8	4	31	0	4	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0003	4341	38	2	7	22	3	4	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0004	4342	20	16	3	1	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0005	4342	19	10	5	0	1	3	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0006	4343	11	2	3	5	0	1	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	1/0	t0007	4342	8	6	1	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0008	4343	7	7	0	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0009	4342	5	4	1	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0010	4343	5	1	1	3	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0011	4342	4	1	0	3	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0012	4341	4	3	1	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0013	4342	4	3	1	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0014	4342	3	0	1	2	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0015	4343	2	1	1	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0016	4341	2	0	0	0	1	1	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0017	4343	1	0	0	0	0	1	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0018	4342	1	1	0	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0019	4343	1	1	0	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0020	4341	1	1	0	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0021	4341	1	1	0	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0022	4341	1	0	0	0	0	1	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0023	4341	1	0	0	1	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0024	4343	1	0	1	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0025	4342	1	1	0	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0026	4342	1	0	0	0	0	1	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	t0027	4341	1	1	0	0	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC2_chr1_205222946_205278343	0/1	t0001	1839	319	72	57	139	15	35	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	t0002	1839	16	0	2	12	0	2	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	1/0	t0003	1839	10	1	2	0	1	5	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	t0004	1839	8	7	1	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	t0005	1839	6	6	0	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	t0006	1839	5	1	3	0	1	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	t0007	1839	2	0	1	0	1	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	t0008	1839	1	1	0	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	t0009	1839	1	1	0	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	t0010	1839	1	1	0	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	t0011	1839	1	1	0	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	t0012	1839	1	0	0	1	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	t0013	1839	1	1	0	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC3_chr12_94562122_94655557	1/0	t0001	4441	80	7	19	44	2	7	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0002	4441	52	12	11	19	2	8	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0003	4441	39	2	8	20	4	5	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0004	4441	32	9	0	19	2	2	copy fasta	TMCC3	chr12	94562122	94655557