JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMCC3_chr12_94562122_94655557	0/0	t0005	4440	15	0	3	9	0	3	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0006	4440	10	0	3	0	4	3	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0007	4440	9	2	5	0	2	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0008	4441	8	0	0	8	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0009	4438	8	0	0	8	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0010	4441	7	5	2	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0011	4441	6	4	2	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0012	4441	6	0	6	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0013	4439	5	1	1	2	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0014	4440	4	0	1	0	0	3	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0015	4441	4	2	1	0	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0016	4441	4	3	0	0	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0017	4441	4	4	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0018	4441	4	4	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0019	4441	4	0	1	3	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0020	4445	4	0	0	4	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0021	4441	4	4	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0022	4442	3	3	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0023	4441	3	3	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0024	4441	3	1	2	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0025	4442	3	2	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0026	4438	3	0	0	3	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0027	4439	3	1	0	0	0	2	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0028	4441	3	2	0	0	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0029	4440	3	0	1	2	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0030	4441	2	2	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0031	4440	2	2	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0032	4441	2	2	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0033	4441	2	0	0	2	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0034	4441	2	2	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0035	4441	2	2	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0036	4440	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0037	4441	1	0	0	0	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0038	4438	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0039	4441	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0040	4439	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0041	4441	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0042	4440	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0043	4442	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0044	4441	1	0	0	0	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0045	4442	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0046	4440	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0047	4441	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0048	4441	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0049	4442	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0050	4440	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0051	4442	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0052	4440	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0053	4442	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0054	4441	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557