JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMCC3_chr12_94562122_94655557	0/0	t0055	4440	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0056	4440	1	0	0	0	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0057	4441	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0058	4440	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/1	t0059	4441	1	0	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0060	4439	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0061	4438	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0062	4441	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0063	4439	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0064	4441	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0065	4440	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0066	4440	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0067	4442	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	t0068	4441	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCO1_chr1_165721795_165773868	1/1	t0001	1346	333	64	69	145	15	38	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0002	1347	12	0	4	1	1	6	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0003	1346	10	10	0	0	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0004	1346	4	4	0	0	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0005	1346	3	3	0	0	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0006	1346	2	0	0	2	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0007	1346	2	2	0	0	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0008	1346	1	1	0	0	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0009	1346	1	0	1	0	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0010	1346	1	0	1	0	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0011	1346	1	0	0	0	0	1	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0012	1346	1	0	0	0	0	1	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0013	1346	1	0	1	0	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0014	1346	1	0	0	1	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	t0015	1347	1	0	0	1	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO2_chr1_40242937_40256684	1/1	t0001	148	418	85	68	199	18	46	copy fasta	TMCO2	chr1	40242937	40256684
TMCO2_chr1_40242937_40256684	0/0	t0002	148	6	6	0	0	0	0	copy fasta	TMCO2	chr1	40242937	40256684
TMCO2_chr1_40242937_40256684	0/0	t0003	148	1	0	0	1	0	0	copy fasta	TMCO2	chr1	40242937	40256684
TMCO2_chr1_40242937_40256684	0/0	t0004	148	1	1	0	0	0	0	copy fasta	TMCO2	chr1	40242937	40256684
TMCO3_chr13_113486021_113555229	1/1	t0001	1025	181	21	41	86	11	20	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0002	1025	77	28	13	28	2	6	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0003	1025	53	7	14	27	0	5	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0004	1025	24	12	2	10	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0005	1033	16	6	1	3	1	5	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0006	1025	4	4	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0007	1033	3	3	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0008	1025	2	0	0	2	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0009	1025	2	2	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0010	1025	2	1	1	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0011	1025	1	1	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0012	1025	1	0	0	1	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0013	1025	1	0	0	1	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	t0014	1025	1	1	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO4_chr1_19677240_19804916	0/0	t0001	1042	157	37	37	46	7	30	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	1/1	t0002	1042	124	29	17	61	3	12	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0003	1042	11	11	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916