JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMCO4_chr1_19677240_19804916	0/0	t0004	1042	2	2	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0005	1042	2	2	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0006	1042	2	1	1	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0007	1042	2	2	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0008	1042	2	1	1	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0009	1042	2	0	2	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0010	1042	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0011	1042	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0012	1042	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0013	1042	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0014	1042	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0015	1042	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0016	1042	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	t0017	1042	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO5A_chr15_37929640_37956422	1/1	t0001	346	345	76	73	144	16	34	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO5A_chr15_37929640_37956422	0/0	t0002	346	11	10	1	0	0	0	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO5A_chr15_37929640_37956422	0/0	t0003	346	4	4	0	0	0	0	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO6_chr5_140634451_140650404	1/1	t0001	384	401	91	58	192	18	40	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	t0002	384	4	4	0	0	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	t0003	384	1	1	0	0	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMDD1_chr12_51808921_51819925	1/1	t0001	52	388	90	60	172	16	48	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	t0002	61	6	6	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMED10_chr14_75126469_75181612	0/1	t0001	3451	84	13	15	43	2	10	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0002	3449	64	26	13	14	4	7	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0003	3452	25	5	4	11	0	5	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0004	3450	25	11	4	5	0	5	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0005	3450	11	3	1	5	1	1	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0006	3449	8	2	4	0	1	1	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0007	3451	7	5	1	1	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0008	3450	6	4	1	1	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	1/0	t0009	3450	5	2	2	0	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0010	3451	5	1	0	3	0	1	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0011	3450	4	1	2	0	0	1	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0012	3452	4	4	0	0	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0013	3450	3	0	0	3	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0014	3452	3	3	0	0	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0015	3452	1	1	0	0	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0016	3449	1	1	0	0	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0017	3450	1	0	1	0	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0018	3450	1	1	0	0	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0019	3450	1	1	0	0	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0020	3451	1	1	0	0	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0021	3449	1	0	0	0	0	1	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	t0022	3450	1	1	0	0	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED1_chr19_10827067_10841212	1/1	t0001	950	304	81	50	115	15	41	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	t0002	950	82	6	7	69	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	t0003	950	9	0	7	0	1	1	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	t0004	950	2	2	0	0	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	t0005	950	1	0	0	1	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	t0006	950	1	0	0	1	0	0	copy fasta	TMED1	chr19	10827067	10841212