Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRMS1L_chr14_35821338_35876963	0/0	t0005	1666	2	2	0	0	0	0	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1L_chr14_35821338_35876963	0/0	t0006	1666	2	2	0	0	0	0	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1L_chr14_35821338_35876963	0/0	t0007	1666	1	0	0	1	0	0	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1L_chr14_35821338_35876963	0/0	t0008	1666	1	0	1	0	0	0	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1L_chr14_35821338_35876963	0/0	t0009	1666	1	0	0	1	0	0	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1L_chr14_35821338_35876963	0/0	t0010	1666	1	0	0	1	0	0	copy fasta	BRMS1L	chr14	35821338	35876963
BRMS1_chr11_66332339_66350104	1/1	t0001	684	226	76	43	79	14	12	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/0	t0002	684	105	5	16	60	1	23	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/0	t0003	684	83	6	12	55	3	7	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/0	t0004	684	5	5	0	0	0	0	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/0	t0005	684	2	0	0	2	0	0	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/0	t0006	684	2	0	0	2	0	0	copy fasta	BRMS1	chr11	66332339	66350104
BRMS1_chr11_66332339_66350104	0/0	t0007	684	1	0	1	0	0	0	copy fasta	BRMS1	chr11	66332339	66350104
BROX_chr1_222707564_222740187	0/1	t0001	2869	112	14	19	60	5	13	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	1/0	t0002	2869	90	13	19	49	1	7	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0003	2868	40	23	4	5	2	6	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0004	2848	37	3	4	24	0	6	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0005	2869	21	0	0	20	1	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0006	2870	16	9	3	2	0	2	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0007	2869	10	10	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0008	2870	8	1	4	3	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0009	2869	8	0	2	0	2	4	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0010	2869	6	6	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0011	2864	5	0	1	0	2	2	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0012	2867	4	4	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0013	2870	3	0	0	1	0	2	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0014	2869	3	2	1	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0015	2870	3	3	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0016	2869	2	1	1	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0017	2869	2	0	1	0	0	1	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0018	2868	2	2	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0019	2868	2	2	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0020	2870	2	0	0	2	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0021	2869	1	0	0	1	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0022	2869	1	1	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0023	2850	1	0	0	1	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0024	2869	1	0	0	1	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0025	2867	1	1	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0026	2870	1	1	0	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0027	2869	1	0	0	0	0	1	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0028	2865	1	0	1	0	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0029	2856	1	0	0	1	0	0	copy fasta	BROX	chr1	222707564	222740187
BROX_chr1_222707564_222740187	0/0	t0030	2869	1	0	0	0	1	0	copy fasta	BROX	chr1	222707564	222740187
BRPF1_chr3_9726735_9753015	1/1	t0001	1081	404	83	78	181	17	43	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	t0002	1080	9	4	0	5	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	t0003	1096	4	0	1	1	1	1	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	t0004	1081	2	2	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	t0005	1081	1	0	0	1	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	t0006	1081	1	0	0	0	0	1	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	t0007	1081	1	0	0	1	0	0	copy fasta	BRPF1	chr3	9726735	9753015