JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMED1_chr19_10827067_10841212	0/0	t0007	950	1	0	0	1	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	t0008	950	1	0	0	1	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	t0009	950	1	1	0	0	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED2_chr12_123579552_123603582	0/1	t0001	1937	137	19	40	55	9	13	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0002	1939	34	12	3	11	1	7	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0003	1936	27	6	9	1	2	9	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0004	1938	19	15	3	0	0	1	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0005	1936	18	17	1	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0006	1937	10	0	3	2	5	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0007	1939	7	7	0	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	1/0	t0008	1939	5	4	0	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0009	1927	5	4	1	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0010	1936	3	1	2	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0011	1938	2	0	0	1	0	1	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0012	1936	2	2	0	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0013	1936	2	2	0	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0014	1929	2	2	0	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0015	1937	2	0	0	2	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0016	1939	1	0	0	1	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0017	1937	1	0	1	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0018	1936	1	0	0	1	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0019	1937	1	0	1	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0020	1936	1	1	0	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0021	1937	1	0	0	1	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0022	1937	1	0	0	0	1	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0023	1938	1	0	0	0	0	1	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	t0024	1937	1	0	0	1	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED3_chr15_79306112_79327840	0/1	t0001	765	297	46	53	155	16	26	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	t0002	765	122	33	29	37	2	21	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	1/0	t0003	765	10	8	0	1	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	t0004	765	5	0	1	4	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	t0005	765	5	5	0	0	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	t0006	765	1	0	0	1	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	t0007	765	1	1	0	0	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	t0008	765	1	0	1	0	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	t0009	765	1	1	0	0	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	t0010	765	1	0	0	0	0	1	copy fasta	TMED3	chr15	79306112	79327840
TMED4_chr7_44572894_44587231	0/0	t0001	1612	82	14	4	55	0	9	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0002	1612	71	23	32	1	3	12	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0003	1604	66	12	8	45	1	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	1/0	t0004	1611	64	7	20	22	6	8	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/1	t0005	1605	35	0	4	20	5	5	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0006	1613	11	5	1	1	1	3	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0007	1604	10	10	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0008	1611	7	7	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0009	1613	7	3	1	3	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0010	1611	6	1	0	5	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0011	1612	6	6	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0012	1611	5	0	0	5	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0013	1611	5	3	2	0	0	0	copy fasta	TMED4	chr7	44572894	44587231