JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMED4_chr7_44572894_44587231	0/0	t0014	1611	4	0	2	2	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0015	1612	4	0	0	4	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0016	1611	2	0	0	2	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0017	1612	2	0	1	0	0	1	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0018	1612	2	0	2	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0019	1612	1	0	1	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0020	1611	1	0	0	0	0	1	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0021	1612	1	0	0	0	0	1	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0022	1604	1	0	0	0	0	1	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0023	1611	1	0	0	0	0	1	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0024	1612	1	1	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0025	1611	1	1	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0026	1613	1	1	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0027	1613	1	1	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0028	1605	1	1	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0029	1612	1	1	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0030	1604	1	0	0	1	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	t0031	1611	1	1	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED5_chr1_93144742_93185413	0/1	t0001	5100	121	5	32	62	7	14	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0002	5100	79	3	16	52	2	6	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	1/0	t0003	5100	45	26	11	0	5	2	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0004	5100	34	14	6	9	0	5	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0005	5100	16	16	0	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0006	5100	8	8	0	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0007	5100	7	0	0	7	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0008	5100	6	6	0	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0009	5100	4	0	0	3	0	1	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0010	5102	4	3	1	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0011	5100	4	3	1	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0012	5100	2	0	0	0	2	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0013	5100	2	0	0	2	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0014	5100	1	0	0	0	0	1	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0015	5100	1	0	0	1	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0016	5100	1	1	0	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0017	5100	1	1	0	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0018	5100	1	0	0	1	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0019	5100	1	0	0	1	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0020	5100	1	0	0	1	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0021	5100	1	1	0	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0022	5100	1	0	0	0	0	1	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0023	5100	1	0	1	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0024	5100	1	0	0	1	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	t0025	5100	1	1	0	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED6_chr16_69338250_69356786	1/1	t0001	191	408	94	76	173	18	45	copy fasta	TMED6	chr16	69338250	69356786
TMED6_chr16_69338250_69356786	0/0	t0002	191	1	0	0	1	0	0	copy fasta	TMED6	chr16	69338250	69356786
TMED6_chr16_69338250_69356786	0/0	t0003	176	1	0	0	0	0	1	copy fasta	TMED6	chr16	69338250	69356786
TMED7_chr5_115608210_115631036	0/0	t0001	3244	142	36	23	68	5	10	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	1/1	t0002	3244	118	20	22	52	5	17	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0003	3244	76	11	8	41	3	13	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0004	3244	15	9	2	0	0	4	copy fasta	TMED7	chr5	115608210	115631036