JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMED7_chr5_115608210_115631036	0/0	t0005	3244	5	5	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0006	3245	3	0	1	1	0	1	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0007	3244	3	0	0	3	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0008	3244	2	2	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0009	3244	2	0	0	2	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0010	3245	2	1	1	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0011	3244	2	2	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0012	3244	2	0	0	1	1	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0013	3244	1	0	1	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0014	3244	1	1	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0015	3244	1	0	1	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0016	3244	1	1	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0017	3244	1	0	0	0	0	1	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0018	3244	1	0	0	1	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0019	3244	1	0	1	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0020	3244	1	1	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0021	3244	1	1	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0022	3244	1	1	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0023	3244	1	1	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0024	3244	1	0	0	1	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0025	3244	1	1	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	t0026	3245	1	1	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED8_chr14_77330029_77382094	0/1	t0001	6792	80	1	14	52	4	8	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0002	6793	40	6	4	27	0	3	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0003	6783	32	2	15	5	5	5	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0004	6794	25	2	9	12	1	1	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0005	6792	18	14	0	4	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0006	6794	15	7	3	1	2	2	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0007	6786	13	1	3	6	2	1	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0008	6791	12	10	0	0	0	2	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0009	6792	10	9	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0010	6792	7	7	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0011	6790	5	0	2	0	0	3	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0012	6792	4	4	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0013	6793	4	3	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0014	6793	4	0	0	4	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0015	6783	3	3	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0016	6783	3	0	0	0	0	3	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0017	6792	3	0	2	0	1	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0018	6792	3	0	0	3	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0019	6792	3	0	0	3	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0020	6789	3	3	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0021	6792	2	1	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0022	6792	2	2	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0023	6792	2	0	0	0	0	2	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0024	6792	2	1	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0025	6794	2	2	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0026	6792	1	0	0	1	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0027	6793	1	0	0	1	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0028	6791	1	0	0	1	0	0	copy fasta	TMED8	chr14	77330029	77382094