JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMED8_chr14_77330029_77382094	0/0	t0029	6791	1	0	0	0	0	1	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0030	6785	1	0	0	0	1	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0031	6791	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0032	6791	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0033	6791	1	0	0	0	0	1	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0034	6783	1	0	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0035	6783	1	0	0	0	0	1	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0036	6791	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0037	6792	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0038	6792	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0039	6792	1	0	0	0	0	1	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0040	6792	1	0	0	1	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0041	6792	1	0	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0042	6792	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0043	6792	1	0	0	1	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0044	6792	1	0	0	1	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0045	6792	1	0	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0046	6820	1	0	0	1	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	1/0	t0047	6784	1	0	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0048	6792	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0049	6792	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0050	6784	1	0	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0051	6792	1	0	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0052	6793	1	0	0	1	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0053	6785	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0054	6794	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0055	6786	1	0	0	1	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	t0056	6792	1	0	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED9_chr5_177587203_177602242	0/0	t0001	1840	185	50	33	80	7	15	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/1	t0002	1840	107	16	22	40	7	21	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0003	1840	82	1	15	58	1	7	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0004	1840	29	6	8	7	3	5	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0005	1840	6	6	0	0	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0006	1841	5	3	0	2	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0007	1839	5	5	0	0	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	1/0	t0008	1839	4	3	0	0	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0009	1840	3	0	0	3	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0010	1840	2	2	0	0	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0011	1840	2	2	0	0	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0012	1840	1	1	0	0	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0013	1840	1	1	0	0	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0014	1840	1	0	0	1	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0015	1839	1	0	0	1	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0016	1840	1	1	0	0	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0017	1840	1	0	0	1	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0018	1841	1	0	0	1	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	t0019	1840	1	1	0	0	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMEFF1_chr9_100468149_100582636	1/1	t0001	1433	166	50	40	40	12	22	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF1_chr9_100468149_100582636	0/0	t0002	1433	47	6	4	29	0	8	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF1_chr9_100468149_100582636	0/0	t0003	1433	15	15	0	0	0	0	copy fasta	TMEFF1	chr9	100468149	100582636