JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEFF1_chr9_100468149_100582636	0/0	t0004	1433	7	0	0	7	0	0	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF1_chr9_100468149_100582636	0/0	t0005	1433	3	0	0	2	0	1	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF1_chr9_100468149_100582636	0/0	t0006	1433	1	1	0	0	0	0	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF1_chr9_100468149_100582636	0/0	t0007	1433	1	0	0	0	0	1	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF1_chr9_100468149_100582636	0/0	t0008	1433	1	0	0	1	0	0	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF1_chr9_100468149_100582636	0/0	t0009	1433	1	0	0	1	0	0	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF2_chr2_191944046_192199933	0/1	t0001	1675	142	54	34	39	5	9	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	1/0	t0002	1675	4	3	0	0	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	t0003	1675	4	4	0	0	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	t0004	1675	3	3	0	0	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	t0005	1672	3	3	0	0	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	t0006	1674	2	2	0	0	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	t0007	1675	1	1	0	0	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	t0008	1675	1	1	0	0	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	t0009	1675	1	0	0	1	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	t0010	1675	1	1	0	0	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	t0011	1675	1	0	0	0	1	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	t0012	1675	1	0	0	0	0	1	copy fasta	TMEFF2	chr2	191944046	192199933
TMEM100_chr17_55714627_55727864	1/1	t0001	1351	398	75	78	197	14	32	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0002	1351	13	13	0	0	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0003	1351	3	0	0	3	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0004	1351	2	0	0	0	0	2	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0005	1351	2	2	0	0	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0006	1351	2	2	0	0	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0007	1351	1	0	0	1	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0008	1351	1	1	0	0	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0009	1351	1	1	0	0	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0010	1351	1	0	1	0	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0011	1351	1	0	1	0	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0012	1351	1	0	0	1	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0013	1351	1	1	0	0	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	t0014	1351	1	1	0	0	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM101_chr17_44006188_44019963	0/1	t0001	752	327	77	67	136	10	36	copy fasta	TMEM101	chr17	44006188	44019963
TMEM101_chr17_44006188_44019963	0/0	t0002	752	29	0	3	24	0	2	copy fasta	TMEM101	chr17	44006188	44019963
TMEM101_chr17_44006188_44019963	1/0	t0003	752	16	13	2	0	0	0	copy fasta	TMEM101	chr17	44006188	44019963
TMEM101_chr17_44006188_44019963	0/0	t0004	751	3	0	0	3	0	0	copy fasta	TMEM101	chr17	44006188	44019963
TMEM101_chr17_44006188_44019963	0/0	t0005	752	1	0	0	1	0	0	copy fasta	TMEM101	chr17	44006188	44019963
TMEM102_chr17_7430435_7442679	1/1	t0001	455	289	73	62	104	13	35	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	t0002	455	65	17	12	30	3	3	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	t0003	455	6	6	0	0	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	t0004	455	1	0	0	1	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	t0005	455	1	0	0	1	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM104_chr17_74771499_74844753	0/0	t0001	3213	73	12	20	25	2	14	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/1	t0002	3213	67	11	18	23	3	11	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0003	3214	43	0	7	23	5	8	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0004	3213	21	12	1	7	0	1	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0005	3213	18	8	4	0	3	3	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0006	3214	17	0	5	8	1	3	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0007	3214	8	8	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0008	3214	7	4	2	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753