JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM104_chr17_74771499_74844753	0/0	t0009	3213	5	5	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0010	3213	5	5	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0011	3214	4	4	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0012	3214	4	4	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0013	3214	3	2	1	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0014	3214	3	0	0	3	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0015	3214	2	1	1	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0016	3213	2	0	0	2	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0017	3213	2	0	0	2	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0018	3213	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0019	3214	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0020	3214	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0021	3213	1	0	1	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0022	3213	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0023	3213	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0024	3213	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0025	3213	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0026	3213	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0027	3213	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0028	3214	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0029	3213	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0030	3214	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0031	3214	1	0	0	0	0	1	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0032	3213	1	0	1	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	1/0	t0033	3213	1	0	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0034	3213	1	0	1	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0035	3213	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0036	3213	1	0	0	0	0	1	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	t0037	3214	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM106A_chr17_43206875_43225041	0/0	t0001	2479	137	4	33	79	9	12	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/1	t0002	2477	124	22	24	53	4	20	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	1/0	t0003	2478	19	14	2	0	0	2	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0004	2479	15	6	3	4	0	2	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0005	2478	14	13	1	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0006	2478	12	12	0	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0007	2479	9	8	1	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0008	2479	8	0	7	0	0	1	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0009	2478	6	6	0	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0010	2478	4	0	1	3	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0011	2479	3	0	1	0	0	2	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0012	2477	3	3	0	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0013	2477	3	3	0	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0014	2477	2	0	0	0	1	1	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0015	2478	2	0	0	2	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0016	2478	2	0	1	1	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0017	2477	2	1	1	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0018	2479	1	0	0	0	0	1	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0019	2477	1	0	0	1	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0020	2476	1	0	0	1	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0021	2478	1	1	0	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041