JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM106A_chr17_43206875_43225041	0/0	t0022	2478	1	0	0	0	0	1	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0023	2477	1	0	0	1	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0024	2476	1	0	1	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0025	2478	1	1	0	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	t0026	2479	1	0	0	1	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106B_chr7_12206294_12248367	0/0	t0001	11531	25	1	4	14	1	5	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0002	11199	18	1	3	10	1	3	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0003	11214	11	0	5	6	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0004	11225	10	0	1	8	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0005	11530	9	3	1	5	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0006	11536	9	0	6	0	2	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0007	11222	8	8	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0008	11213	8	1	3	0	2	2	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0009	11532	8	0	4	4	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0010	11199	7	7	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0011	11218	7	0	1	6	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0012	11223	7	0	0	5	0	2	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0013	11221	6	6	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0014	11222	6	0	1	5	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0015	11218	6	2	1	1	0	2	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0016	11221	6	1	0	4	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/1	t0017	11219	6	1	2	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0018	11533	6	0	0	6	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0019	11225	5	5	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0020	11526	5	5	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0021	11220	5	0	0	5	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0022	11212	5	5	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0023	11535	5	1	1	2	1	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0024	11208	4	4	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0025	11216	4	0	1	3	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0026	11226	4	0	0	4	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0027	11222	4	0	0	4	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0028	11220	4	0	1	1	0	2	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0029	11221	4	0	0	4	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0030	11531	4	0	0	4	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0031	11529	4	0	1	2	1	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0032	11520	4	0	2	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0033	11208	3	3	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0034	11234	3	0	0	3	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0035	11230	3	0	0	3	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0036	11228	3	0	0	2	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0037	11218	3	0	3	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0038	11214	3	2	0	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0039	11225	3	1	0	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0040	11227	3	0	0	3	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0041	11531	3	0	1	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0042	11532	3	0	2	0	1	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0043	11214	3	0	0	3	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0044	11221	3	1	0	0	2	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0045	11217	3	1	0	0	0	2	copy fasta	TMEM106B	chr7	12206294	12248367