JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM106B_chr7_12206294_12248367	0/0	t0046	11528	2	2	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0047	11225	2	0	2	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0048	11197	2	2	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0049	11203	2	0	0	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0050	11201	2	0	1	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0051	11223	2	0	0	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0052	11224	2	0	0	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0053	11219	2	2	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0054	11219	2	2	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0055	11216	2	2	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0056	11215	2	1	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0057	11225	2	2	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0058	11211	2	0	0	0	1	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0059	5848	2	0	0	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0060	11527	2	0	1	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	1/0	t0061	11527	2	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0062	11532	2	0	0	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0063	11533	2	0	0	0	0	2	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0064	11531	2	0	0	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0065	11528	2	0	0	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0066	11519	2	0	0	2	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0067	11537	2	0	1	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0068	11223	2	0	1	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0069	11532	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0070	11214	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0071	11199	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0072	11224	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0073	11207	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0074	11199	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0075	11199	1	0	0	0	1	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0076	11199	1	0	0	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0077	11199	1	0	0	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0078	11199	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0079	11199	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0080	11199	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0081	11227	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0082	11225	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0083	11220	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0084	11216	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0085	11206	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0086	11216	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0087	11219	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0088	11217	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0089	11223	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0090	11221	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0091	11228	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0092	11240	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0093	11232	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0094	11224	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0095	11218	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367