JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM106B_chr7_12206294_12248367	0/0	t0096	11222	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0097	11225	1	0	0	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0098	11223	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0099	11213	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0100	11225	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0101	11221	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0102	11205	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0103	11221	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0104	11219	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0105	11223	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0106	11223	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0107	11229	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0108	11225	1	0	0	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0109	11217	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0110	11211	1	0	0	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0111	11211	1	0	0	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0112	11211	1	0	0	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0113	11207	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0114	11217	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0115	11225	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0116	11225	1	0	0	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0117	11211	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0118	11546	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0119	11533	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0120	11525	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0121	11534	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0122	11533	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0123	11532	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0124	11533	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0125	11534	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0126	11532	1	0	0	0	1	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0127	11532	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0128	11531	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0129	11531	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0130	11530	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0131	11529	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0132	11530	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0133	11530	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0134	11531	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0135	11528	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0136	11527	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0137	11519	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0138	11531	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0139	11526	1	0	0	0	1	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0140	11539	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0141	11537	1	0	0	0	1	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0142	11539	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0143	11538	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0144	11537	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0145	11529	1	0	0	0	0	1	copy fasta	TMEM106B	chr7	12206294	12248367