JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM106B_chr7_12206294_12248367	0/0	t0146	11531	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0147	11535	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0148	11535	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0149	11534	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0150	11221	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0151	11535	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0152	11533	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0153	11531	1	1	0	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0154	11219	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0155	11211	1	0	1	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0156	11214	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	t0157	11229	1	0	0	1	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106C_chr12_47958596_47973878	0/0	t0001	788	110	25	16	45	6	18	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/1	t0002	789	102	0	15	75	2	9	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	t0003	787	83	20	15	42	3	3	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	1/0	t0004	787	63	18	21	7	4	12	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	t0005	788	38	11	2	21	1	3	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	t0006	785	22	17	2	0	0	3	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	t0007	787	1	1	0	0	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	t0008	788	1	0	1	0	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	t0009	787	1	0	0	1	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	t0010	787	1	0	0	1	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM107_chr17_8167457_8181380	0/0	t0001	1842	68	13	2	53	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0002	1841	64	0	15	41	1	7	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/1	t0003	1841	41	3	15	14	6	2	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	1/0	t0004	1841	19	4	8	3	0	3	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0005	1843	17	0	2	14	0	1	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0006	1842	17	1	9	7	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0007	1844	16	0	7	2	2	5	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0008	1841	16	4	3	1	0	8	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0009	1842	11	3	1	5	1	1	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0010	1843	10	1	1	0	1	7	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0011	1842	8	0	1	4	2	1	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0012	1844	8	7	1	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0013	1842	8	8	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0014	1843	7	1	0	6	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0015	1843	6	4	1	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0016	1843	5	5	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0017	1840	3	3	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0018	1844	3	0	0	3	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0019	1840	3	0	0	3	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0020	1840	3	2	1	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0021	1843	3	3	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0022	1842	3	0	0	3	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0023	1843	2	0	1	0	1	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0024	1845	2	0	1	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0025	1844	2	0	2	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0026	1841	2	0	0	2	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0027	1843	2	0	0	0	0	2	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0028	1841	2	0	0	2	0	0	copy fasta	TMEM107	chr17	8167457	8181380