Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRPF1_chr3_9726735_9753015	0/0	t0008	1081	1	1	0	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	t0009	1081	1	0	0	0	0	1	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	t0010	1093	1	0	0	1	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF1_chr3_9726735_9753015	0/0	t0011	1111	1	0	1	0	0	0	copy fasta	BRPF1	chr3	9726735	9753015
BRPF3_chr6_36191744_36237790	0/1	t0001	2435	173	27	40	79	5	21	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0002	2434	68	28	5	31	2	2	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	1/0	t0003	2435	56	16	11	25	1	2	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0004	2435	13	0	1	9	0	3	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0005	2435	11	9	2	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0006	2435	7	4	1	2	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0007	2434	1	0	0	1	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0008	2434	1	0	0	1	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0009	2434	1	0	0	0	0	1	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0010	2435	1	1	0	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0011	2435	1	1	0	0	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0012	2435	1	0	0	1	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0013	2435	1	0	0	1	0	0	copy fasta	BRPF3	chr6	36191744	36237790
BRPF3_chr6_36191744_36237790	0/0	t0014	2434	1	0	0	0	0	1	copy fasta	BRPF3	chr6	36191744	36237790
BRS3_chrX_136482947_136498780	1/1	t0001	1574	240	44	50	109	7	28	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	t0002	1574	27	19	1	7	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	t0003	1574	4	0	0	4	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	t0004	1575	2	1	0	1	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	t0005	1574	1	1	0	0	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	t0006	1574	1	1	0	0	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	t0007	1575	1	0	0	1	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	t0008	1574	1	0	0	1	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	t0009	1573	1	0	0	1	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	t0010	1579	1	0	0	1	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRS3_chrX_136482947_136498780	0/0	t0011	1574	1	0	0	1	0	0	copy fasta	BRS3	chrX	136482947	136498780
BRSK1_chr19_55278997_55317562	0/0	t0001	942	134	25	23	70	5	11	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/1	t0002	943	104	35	23	26	4	15	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0003	944	28	14	8	3	1	2	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0004	941	9	3	3	3	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0005	942	8	8	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0006	943	7	0	3	3	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0007	943	5	0	1	3	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0008	943	4	0	0	2	0	2	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0009	943	4	1	1	1	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0010	944	4	0	2	1	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0011	944	3	2	0	0	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0012	944	3	1	2	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0013	942	2	2	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0014	944	2	0	1	0	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0015	945	2	0	1	0	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0016	944	2	1	1	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0017	943	1	1	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0018	942	1	0	0	1	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0019	944	1	0	0	1	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0020	928	1	0	0	0	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0021	941	1	1	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562