JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM107_chr17_8167457_8181380	0/0	t0029	1842	2	2	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0030	1841	2	2	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0031	1842	2	0	0	0	0	2	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0032	1843	2	2	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0033	1842	2	2	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0034	1843	2	0	0	2	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0035	1842	2	0	2	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0036	1842	2	0	0	2	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0037	1841	2	0	0	0	2	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0038	1844	2	2	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0039	1840	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0040	1839	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0041	1844	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0042	1845	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0043	1841	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0044	1842	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0045	1841	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0046	1843	1	0	1	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0047	1840	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0048	1845	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0049	1841	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0050	1841	1	0	0	0	0	1	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0051	1841	1	0	0	0	0	1	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0052	1829	1	0	1	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0053	1841	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0054	1844	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0055	1841	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0056	1845	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0057	1841	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0058	1842	1	0	0	0	0	1	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0059	1840	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0060	1843	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0061	1842	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0062	1841	1	0	0	0	0	1	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0063	1841	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0064	1841	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0065	1842	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0066	1845	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0067	1843	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0068	1842	1	0	1	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0069	1841	1	0	0	0	0	1	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0070	1843	1	0	1	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0071	1842	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0072	1843	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0073	1841	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0074	1841	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0075	1842	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0076	1841	1	0	0	0	0	1	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0077	1841	1	0	0	0	0	1	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0078	1844	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380