JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM107_chr17_8167457_8181380	0/0	t0079	1844	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0080	1843	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0081	1842	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0082	1844	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0083	1842	1	0	1	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0084	1842	1	0	1	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0085	1842	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0086	1843	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0087	1842	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0088	1841	1	0	1	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0089	1841	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0090	1842	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0091	1842	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0092	1844	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0093	1842	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0094	1842	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0095	1842	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0096	1843	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0097	1843	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0098	1844	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0099	1842	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0100	1843	1	0	0	1	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	t0101	1841	1	1	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM108_chr3_133033391_133402775	0/1	t0001	2001	73	12	23	26	4	7	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0002	2001	72	8	18	31	4	11	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0003	2000	13	8	3	0	0	2	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0004	1999	10	10	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0005	2001	10	7	3	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0006	2001	7	7	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0007	2000	6	2	0	1	0	3	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0008	2001	6	5	1	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0009	2002	3	2	0	0	0	1	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0010	2002	2	2	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0011	2002	2	2	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0012	2002	2	2	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0013	2001	2	2	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0014	2001	2	2	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	1/0	t0015	2000	1	0	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0016	2000	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0017	2001	1	0	0	0	0	1	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0018	2001	1	0	0	1	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0019	2001	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0020	2001	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0021	2001	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0022	2001	1	0	0	1	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0023	2001	1	0	0	0	0	1	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	t0024	2000	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM109_chr11_60909158_60928443	1/1	t0001	1398	313	51	59	156	12	33	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	t0002	1398	16	14	1	0	0	1	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	t0003	1398	15	15	0	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443