JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM109_chr11_60909158_60928443	0/0	t0004	1395	7	7	0	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	t0005	1408	3	3	0	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	t0006	1398	2	0	0	0	0	2	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	t0007	1398	2	2	0	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	t0008	1398	1	0	1	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	t0009	1398	1	0	0	1	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	t0010	1398	1	0	1	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	t0011	1398	1	0	0	1	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM114_chr16_8564500_8595511	0/0	t0001	947	235	48	41	109	13	24	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	1/0	t0002	947	92	28	16	35	0	12	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/1	t0003	947	52	6	14	22	2	7	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	t0004	947	19	7	0	11	0	1	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	t0005	947	7	3	2	0	1	1	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	t0006	946	6	0	0	6	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	t0007	947	1	0	0	1	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	t0008	947	1	0	1	0	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	t0009	947	1	0	0	1	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	t0010	946	1	0	0	1	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	t0011	947	1	0	0	0	0	1	copy fasta	TMEM114	chr16	8564500	8595511
TMEM115_chr3_50349750_50364521	1/1	t0001	1052	337	84	59	150	13	29	copy fasta	TMEM115	chr3	50349750	50364521
TMEM115_chr3_50349750_50364521	0/0	t0002	1052	4	1	0	2	0	1	copy fasta	TMEM115	chr3	50349750	50364521
TMEM115_chr3_50349750_50364521	0/0	t0003	1052	3	0	3	0	0	0	copy fasta	TMEM115	chr3	50349750	50364521
TMEM115_chr3_50349750_50364521	0/0	t0004	1052	3	0	0	3	0	0	copy fasta	TMEM115	chr3	50349750	50364521
TMEM115_chr3_50349750_50364521	0/0	t0005	1052	3	3	0	0	0	0	copy fasta	TMEM115	chr3	50349750	50364521
TMEM115_chr3_50349750_50364521	0/0	t0006	1052	1	0	0	1	0	0	copy fasta	TMEM115	chr3	50349750	50364521
TMEM115_chr3_50349750_50364521	0/0	t0007	1052	1	0	0	0	1	0	copy fasta	TMEM115	chr3	50349750	50364521
TMEM115_chr3_50349750_50364521	0/0	t0008	1052	1	1	0	0	0	0	copy fasta	TMEM115	chr3	50349750	50364521
TMEM115_chr3_50349750_50364521	0/0	t0009	1052	1	1	0	0	0	0	copy fasta	TMEM115	chr3	50349750	50364521
TMEM116_chr12_111926298_112018165	1/1	t0001	521	336	89	51	154	6	34	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	t0002	521	3	3	0	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	t0003	521	2	2	0	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	t0004	521	1	0	1	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM117_chr12_43831081_44394758	1/1	t0001	1231	54	31	18	0	0	3	copy fasta	TMEM117	chr12	43831081	44394758
TMEM117_chr12_43831081_44394758	0/0	t0002	1231	44	38	6	0	0	0	copy fasta	TMEM117	chr12	43831081	44394758
TMEM117_chr12_43831081_44394758	0/0	t0003	1231	5	5	0	0	0	0	copy fasta	TMEM117	chr12	43831081	44394758
TMEM117_chr12_43831081_44394758	0/0	t0004	1231	4	4	0	0	0	0	copy fasta	TMEM117	chr12	43831081	44394758
TMEM117_chr12_43831081_44394758	0/0	t0005	1231	1	0	0	0	0	1	copy fasta	TMEM117	chr12	43831081	44394758
TMEM117_chr12_43831081_44394758	0/0	t0006	1231	1	1	0	0	0	0	copy fasta	TMEM117	chr12	43831081	44394758
TMEM117_chr12_43831081_44394758	0/0	t0007	1231	1	1	0	0	0	0	copy fasta	TMEM117	chr12	43831081	44394758
TMEM119_chr12_108584851_108603084	1/0	t0001	1811	271	32	52	137	15	34	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0002	1811	104	24	17	54	0	9	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0003	1810	17	16	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0004	1811	11	6	0	5	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0005	1811	8	8	0	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/1	t0006	1811	4	0	1	0	1	1	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0007	1811	4	3	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0008	1811	4	3	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0009	1811	3	0	0	3	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0010	1811	2	2	0	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0011	1811	2	1	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084