JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM119_chr12_108584851_108603084	0/0	t0012	1811	2	0	0	0	0	2	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0013	1811	1	1	0	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0014	1811	1	0	0	1	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0015	1811	1	0	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0016	1810	1	0	0	1	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0017	1811	1	0	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0018	1811	1	1	0	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0019	1811	1	0	0	0	0	1	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0020	1811	1	0	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0021	1811	1	1	0	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0022	1811	1	0	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0023	1811	1	0	0	0	0	1	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	t0024	1811	1	0	0	1	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM11_chr17_21192954_21219161	1/1	t0001	380	417	87	76	192	14	46	copy fasta	TMEM11	chr17	21192954	21219161
TMEM11_chr17_21192954_21219161	0/0	t0002	380	4	2	2	0	0	0	copy fasta	TMEM11	chr17	21192954	21219161
TMEM11_chr17_21192954_21219161	0/0	t0003	380	1	1	0	0	0	0	copy fasta	TMEM11	chr17	21192954	21219161
TMEM120A_chr7_75981831_75999595	1/1	t0001	367	336	79	71	133	14	37	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	t0002	367	23	7	3	1	2	10	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	t0003	367	4	0	0	4	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	t0004	367	4	4	0	0	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	t0005	367	1	0	0	0	0	1	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120B_chr12_121707752_121787068	0/1	t0001	6493	39	1	9	17	3	8	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0002	6486	21	9	1	8	0	3	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0003	6493	18	13	4	0	1	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0004	6493	18	0	4	10	1	3	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0005	6486	12	7	0	2	0	3	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0006	6486	10	0	0	10	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0007	6494	9	0	0	7	0	2	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0008	6494	8	0	0	8	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0009	6494	7	7	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0010	6487	7	2	1	3	0	1	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0011	6487	7	1	6	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	1/0	t0012	6491	6	4	1	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0013	6493	5	0	0	5	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0014	6494	5	0	4	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0015	6495	5	0	0	1	0	4	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0016	6486	4	4	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0017	6493	4	0	3	0	1	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0018	6494	4	4	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0019	6486	3	0	0	3	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0020	6486	3	0	3	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0021	6486	3	3	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0022	6493	3	0	1	0	2	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0023	6493	3	0	0	0	2	1	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0024	6494	3	0	3	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0025	6494	3	0	1	2	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0026	6493	3	3	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0027	6487	2	0	0	2	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0028	6486	2	0	0	2	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0029	6486	2	2	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068