JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM120B_chr12_121707752_121787068	0/0	t0080	6492	1	0	1	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0081	6492	1	0	0	0	1	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0082	6492	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0083	6493	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0084	6493	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0085	6493	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0086	6492	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0087	6494	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0088	6493	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0089	6493	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0090	6493	1	0	1	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0091	6491	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0092	6493	1	0	0	0	0	1	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0093	6492	1	0	1	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0094	6493	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0095	6495	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0096	6494	1	0	0	0	0	1	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0097	6494	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0098	6494	1	0	1	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0099	6493	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0100	6493	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0101	6493	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0102	6480	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0103	6493	1	0	0	0	1	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0104	6492	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0105	6494	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0106	6496	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0107	6493	1	0	0	1	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0108	6491	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0109	6494	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0110	6493	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	t0111	6493	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM121B_chr22_17111297_17126360	0/0	t0001	3328	89	1	17	67	0	4	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0002	3328	70	1	10	51	0	8	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	1/0	t0003	3328	56	16	8	20	3	8	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0004	3329	49	19	9	15	3	3	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0005	3328	39	9	6	17	2	5	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0006	3328	32	23	7	0	1	1	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0007	3327	24	5	1	16	0	2	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0008	3328	17	0	0	16	0	1	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/1	t0009	3328	10	0	5	0	2	2	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0010	3328	9	9	0	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0011	3328	7	0	4	1	0	2	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0012	3329	5	0	2	0	2	1	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0013	3328	5	0	1	3	0	1	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0014	3328	5	4	1	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0015	3327	4	0	0	4	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0016	3328	4	2	1	0	1	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0017	3328	4	4	0	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	t0018	3328	3	0	0	3	0	0	copy fasta	TMEM121B	chr22	17111297	17126360