JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM123_chr11_102391332_102457765	0/0	t0018	2677	1	1	0	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	t0019	2677	1	1	0	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	t0020	2677	1	0	0	0	0	1	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	t0021	2677	1	1	0	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	t0022	2677	1	0	0	1	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	t0023	2677	1	1	0	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	t0024	2646	1	1	0	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	t0025	2676	1	0	0	0	1	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	t0026	2677	1	1	0	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM125_chr1_43264983_43279002	1/0	t0001	1138	169	17	28	90	10	23	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0002	1145	114	19	41	41	5	8	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0003	1145	68	18	1	44	0	5	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/1	t0004	1138	56	26	10	12	1	6	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0005	1145	13	11	2	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0006	1138	5	0	0	5	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0007	1138	4	3	0	0	0	1	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0008	1145	2	2	0	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0009	1145	2	2	0	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0010	1126	1	0	0	1	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0011	1138	1	0	0	0	0	1	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0012	1138	1	0	0	0	0	1	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0013	1138	1	0	0	1	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	t0014	1138	1	0	0	0	0	1	copy fasta	TMEM125	chr1	43264983	43279002
TMEM126A_chr11_85642967_85661542	1/1	t0001	172	208	49	42	86	10	19	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	t0002	176	165	17	26	103	2	17	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	t0003	176	23	22	1	0	0	0	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	t0004	172	1	0	1	0	0	0	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	t0005	176	1	0	0	1	0	0	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126B_chr11_85623593_85641536	1/1	t0001	323	221	49	40	90	16	24	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	t0002	323	190	42	29	97	2	20	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	t0003	323	2	1	1	0	0	0	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	t0004	323	1	0	0	1	0	0	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM127_chr2_96243514_96270997	0/0	t0001	5555	110	19	19	61	2	9	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	1/1	t0002	5555	97	26	14	42	1	12	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0003	5557	34	5	4	16	0	9	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0004	5555	32	0	6	26	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0005	5555	14	11	1	0	0	2	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0006	5555	8	0	7	0	1	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0007	5559	7	1	6	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0008	5551	7	0	0	7	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0009	5557	6	0	0	6	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0010	5555	6	0	0	6	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0011	5555	5	1	1	0	3	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0012	5555	4	4	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0013	5559	4	0	3	0	0	1	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0014	5555	4	1	1	1	0	1	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0015	5555	4	4	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0016	5556	3	0	0	3	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0017	5556	3	0	0	3	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0018	5555	3	0	0	3	0	0	copy fasta	TMEM127	chr2	96243514	96270997