JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM127_chr2_96243514_96270997	0/0	t0019	5555	3	0	2	0	0	1	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0020	5555	3	3	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0021	5557	2	0	1	0	1	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0022	5557	2	0	0	2	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0023	5555	2	0	0	2	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0024	5555	2	0	0	2	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0025	5557	2	0	0	1	0	1	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0026	5558	2	0	1	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0027	5555	2	2	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0028	5557	2	0	0	2	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0029	5555	2	0	0	2	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0030	5559	2	0	2	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0031	5555	2	2	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0032	5555	2	2	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0033	5555	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0034	5555	1	1	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0035	5555	1	0	1	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0036	5555	1	0	0	0	1	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0037	5555	1	0	0	0	0	1	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0038	5555	1	0	0	0	1	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0039	5556	1	1	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0040	5555	1	1	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0041	5557	1	0	0	0	0	1	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0042	5555	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0043	5558	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0044	5556	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0045	5557	1	1	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0046	5555	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0047	5556	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0048	5559	1	1	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0049	5557	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0050	5556	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0051	5555	1	1	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0052	5557	1	1	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0053	5557	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0054	5555	1	0	0	0	0	1	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0055	5555	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0056	5555	1	0	1	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0057	5555	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0058	5555	1	1	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0059	5555	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0060	5555	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0061	5551	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0062	5557	1	1	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0063	5555	1	1	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0064	5555	1	0	0	0	0	1	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	t0065	5555	1	1	0	0	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM128_chr4_4230542_4253223	1/1	t0001	746	308	43	54	165	15	29	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	t0002	746	104	17	20	49	1	17	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	t0003	746	46	34	11	0	0	1	copy fasta	TMEM128	chr4	4230542	4253223