JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM128_chr4_4230542_4253223	0/0	t0004	746	1	0	1	0	0	0	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	t0005	746	1	0	0	0	0	1	copy fasta	TMEM128	chr4	4230542	4253223
TMEM129_chr4_1710952_1726323	0/1	t0001	1715	148	16	26	81	5	19	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	1/0	t0002	1715	91	30	22	31	2	5	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0003	1715	60	8	12	28	3	9	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0004	1631	24	2	6	4	3	9	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0005	1715	12	0	8	4	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0006	1711	12	11	1	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0007	1631	8	7	1	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0008	1715	3	0	0	3	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0009	1631	3	3	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0010	1715	2	0	0	2	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0011	1631	2	2	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0012	1673	2	0	0	0	0	2	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0013	1673	2	1	0	1	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0014	1715	2	0	0	2	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0015	1715	2	2	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0016	1715	2	2	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0017	1620	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0018	1631	1	0	0	0	0	1	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0019	1673	1	0	1	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0020	1673	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0021	1673	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0022	1673	1	0	0	0	1	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0023	1715	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0024	1715	1	0	0	1	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0025	1715	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0026	1715	1	0	1	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0027	1715	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0028	1715	1	0	0	1	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	t0029	1715	1	0	0	0	0	1	copy fasta	TMEM129	chr4	1710952	1726323
TMEM130_chr7_98841490_98875014	0/1	t0001	1710	114	11	28	54	8	12	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0002	1710	63	6	15	27	3	12	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0003	1718	54	10	9	29	2	4	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0004	1712	30	6	4	19	1	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0005	1710	21	19	2	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0006	1714	8	1	3	0	1	3	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0007	1714	8	8	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0008	1716	7	0	1	1	0	5	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0009	1710	7	7	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0010	1710	7	0	5	0	1	1	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0011	1706	6	6	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0012	1722	5	1	0	4	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0013	1720	5	2	0	1	0	2	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0014	1710	4	0	3	0	0	1	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	1/0	t0015	1720	3	2	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0016	1712	3	2	1	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0017	1710	3	0	0	0	0	3	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0018	1704	3	3	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0019	1710	2	0	0	2	0	0	copy fasta	TMEM130	chr7	98841490	98875014