Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRSK1_chr19_55278997_55317562	0/0	t0022	943	1	1	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0023	942	1	0	0	1	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0024	942	1	0	0	1	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0025	944	1	1	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	1/0	t0026	941	1	0	0	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0027	946	1	0	0	1	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0028	946	1	0	0	0	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0029	943	1	0	1	0	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0030	945	1	0	0	0	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0031	945	1	0	0	1	0	0	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0032	942	1	0	0	0	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK1_chr19_55278997_55317562	0/0	t0033	945	1	0	0	0	0	1	copy fasta	BRSK1	chr19	55278997	55317562
BRSK2_chr11_1384934_1467689	0/1	t0001	2319	79	20	13	36	1	8	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0002	2318	44	12	3	24	1	4	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0003	2319	35	18	4	8	4	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0004	2320	23	2	9	7	2	3	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0005	2318	21	2	7	9	0	3	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0006	2320	11	0	5	0	2	4	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0007	2315	10	0	4	6	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0008	2319	9	0	1	6	0	2	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0009	2319	8	0	0	8	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0010	2319	7	0	2	2	2	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0011	2316	5	0	0	4	1	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0012	2315	5	0	0	5	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0013	2319	4	4	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0014	2319	4	3	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0015	2320	4	2	0	0	0	2	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0016	2321	4	2	1	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0017	2316	3	0	0	3	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0018	2320	3	0	2	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0019	2321	3	3	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0020	2319	3	0	0	2	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0021	2320	3	0	2	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0022	2318	3	0	3	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0023	2320	3	1	1	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0024	2317	2	1	0	0	1	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0025	2319	2	0	0	2	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0026	2319	2	0	0	2	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0027	2319	2	2	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0028	2319	2	0	2	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0029	2318	2	2	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0030	2320	2	0	1	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0031	2319	2	1	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0032	2319	2	2	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0033	2319	2	0	0	1	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0034	2323	2	1	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0035	2315	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0036	2317	1	0	0	0	1	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0037	2317	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0038	2315	1	0	0	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689