JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM130_chr7_98841490_98875014	0/0	t0020	1714	2	0	0	2	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0021	1712	2	0	0	2	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0022	1710	2	0	2	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0023	1708	2	0	0	0	0	2	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0024	1714	1	1	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0025	1722	1	1	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0026	1722	1	1	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0027	1720	1	0	1	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0028	1714	1	1	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0029	1712	1	0	1	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0030	1714	1	1	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0031	1714	1	1	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0032	1710	1	0	0	0	0	1	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0033	1712	1	1	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0034	1673	1	0	0	1	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0035	1712	1	0	0	1	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0036	1710	1	0	0	1	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0037	1706	1	1	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0038	1706	1	0	1	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0039	1704	1	0	0	1	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0040	1704	1	1	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0041	1712	1	0	0	1	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	t0042	1714	1	1	0	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM131L_chr4_153461360_153641711	1/1	t0001	174	238	78	48	82	6	22	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	t0002	174	9	9	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	t0003	174	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131_chr2_97751336_98000948	1/1	t0001	1050	80	8	17	42	0	11	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	t0002	1050	53	25	0	27	0	1	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	t0003	1050	50	18	12	13	7	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	t0004	1050	42	5	16	7	5	9	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	t0005	1050	37	23	11	0	2	1	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	t0006	1050	12	12	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	t0007	1051	6	0	0	6	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	t0008	1050	1	0	0	1	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	t0009	1050	1	0	0	1	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	t0010	1050	1	0	0	1	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	t0011	1050	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM132A_chr11_60919460_60942159	1/1	t0001	427	310	54	63	142	16	33	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	t0002	427	18	16	1	0	0	1	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	t0003	436	18	17	0	0	0	1	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	t0004	427	4	0	0	4	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	t0005	427	3	0	0	3	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	t0006	427	2	0	0	2	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	t0007	439	2	1	0	0	0	1	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	t0008	427	2	2	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	t0009	427	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	t0010	427	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	t0011	427	1	0	0	1	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132B_chr12_125181386_125667369	0/0	t0001	8072	19	0	8	6	0	5	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0002	8076	10	8	0	0	0	2	copy fasta	TMEM132B	chr12	125181386	125667369