JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
TMEM132B_chr12_125181386_125667369	0/0	t0003	8075	9	0	5	4	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0004	8075	9	0	4	4	1	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0005	8077	5	0	0	2	3	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0006	8074	4	0	3	1	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0007	8072	4	4	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0008	8078	4	0	1	3	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0009	8072	3	1	2	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0010	8075	3	3	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0011	8070	3	3	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0012	8074	3	3	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0013	8075	3	1	2	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0014	8075	3	3	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0015	8073	2	1	0	0	1	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0016	8073	2	2	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0017	8074	2	1	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0018	8073	2	2	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0019	8075	2	0	0	2	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0020	8070	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0021	8074	1	0	0	1	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0022	8076	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0023	8072	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0024	8086	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0025	8088	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0026	8076	1	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0027	8071	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0028	8077	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0029	8077	1	0	0	0	1	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0030	8073	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0031	8075	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0032	8075	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0033	8070	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0034	8074	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0035	8076	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0036	8076	1	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0037	8076	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0038	8072	1	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0039	8075	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0040	8075	1	0	0	1	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0041	8077	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0042	8075	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0043	8076	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0044	8072	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0045	8072	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0046	8074	1	0	0	1	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0047	8075	1	0	0	1	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0048	8072	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0049	8074	1	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0050	8076	1	0	0	0	1	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0051	8075	1	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0052	8079	1	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369