JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM132B_chr12_125181386_125667369	0/0	t0053	8075	1	0	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0054	8075	1	0	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	t0055	8077	1	0	1	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132C_chr12_128262170_128712911	0/0	t0001	1850	62	19	13	10	1	19	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0002	1850	40	34	3	1	0	2	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0003	1850	19	14	5	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/1	t0004	1850	14	1	5	5	0	2	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0005	1850	10	7	2	0	1	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0006	1850	8	0	0	7	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0007	1850	4	4	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0008	1850	2	2	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0009	1850	2	2	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0010	1850	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0011	1850	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0012	1850	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0013	1850	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0014	1850	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0015	1850	1	0	0	1	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0016	1850	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	t0017	1850	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	1/0	t0018	1850	1	0	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132D_chr12_129066726_129909025	0/0	t0001	2831	26	14	4	2	0	6	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0002	2831	13	1	4	0	3	5	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0003	2836	10	4	3	1	0	2	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0004	2849	8	3	2	1	0	2	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/1	t0005	2831	5	0	0	3	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0006	2835	4	4	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0007	2831	4	4	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0008	2831	3	3	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0009	2831	2	2	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0010	2831	2	2	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0011	2849	1	0	0	0	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0012	2831	1	1	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	1/0	t0013	2836	1	0	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0014	2844	1	1	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0015	2836	1	0	0	0	1	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0016	2831	1	0	0	0	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0017	2831	1	1	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0018	2849	1	1	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0019	2849	1	0	0	1	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0020	2831	1	1	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0021	2831	1	1	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0022	2831	1	0	1	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0023	2831	1	0	1	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0024	2849	1	0	1	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0025	2831	1	1	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0026	2831	1	1	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	t0027	2831	1	1	0	0	0	0	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132E_chr17_34574582_34644318	0/0	t0001	2583	55	12	13	26	1	3	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	t0002	2582	35	15	9	4	4	3	copy fasta	TMEM132E	chr17	34574582	34644318