JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM132E_chr17_34574582_34644318	0/0	t0103	2582	1	0	1	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/1	t0104	2584	1	0	0	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	t0105	2582	1	1	0	0	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	t0106	2583	1	0	0	0	0	1	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	t0107	2584	1	0	0	0	0	1	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM132E_chr17_34574582_34644318	0/0	t0108	2585	1	0	0	1	0	0	copy fasta	TMEM132E	chr17	34574582	34644318
TMEM134_chr11_67456710_67474251	1/0	t0001	2964	118	13	24	58	3	19	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0002	2962	93	22	29	34	3	5	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0003	2961	40	38	2	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0004	2962	21	1	3	15	1	1	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0005	2964	10	0	0	10	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0006	2964	6	0	0	6	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/1	t0007	2965	4	0	0	2	0	1	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0008	2962	4	4	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0009	2961	4	4	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0010	2965	3	0	1	2	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0011	2964	3	0	0	0	0	3	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0012	2963	3	0	0	2	0	1	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0013	2963	3	0	3	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0014	2961	3	3	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0015	2964	2	0	1	0	1	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0016	2961	2	0	1	0	1	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0017	2963	2	2	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0018	2963	2	0	1	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0019	2962	2	0	0	0	2	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0020	2962	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0021	2962	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0022	2963	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0023	2962	1	1	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0024	2964	1	0	0	0	0	1	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0025	2964	1	0	0	0	0	1	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0026	2963	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0027	2964	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0028	2964	1	0	0	0	0	1	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0029	2964	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0030	2964	1	0	0	0	0	1	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0031	2963	1	0	0	0	1	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0032	2963	1	1	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0033	2963	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0034	2962	1	0	0	0	1	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0035	2962	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0036	2962	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0037	2964	1	0	0	1	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0038	2964	1	0	0	0	1	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0039	2962	1	1	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0040	2972	1	1	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0041	2960	1	1	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0042	2960	1	1	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0043	2961	1	1	0	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0044	2964	1	0	1	0	0	0	copy fasta	TMEM134	chr11	67456710	67474251