JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM134_chr11_67456710_67474251	0/0	t0045	2964	1	0	0	0	0	1	copy fasta	TMEM134	chr11	67456710	67474251
TMEM134_chr11_67456710_67474251	0/0	t0046	2962	1	0	0	0	0	1	copy fasta	TMEM134	chr11	67456710	67474251
TMEM135_chr11_87032934_87333824	1/0	t0001	7604	83	16	16	37	4	9	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/1	t0002	7602	30	6	9	7	2	5	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0003	7605	29	15	1	12	0	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0004	7603	16	0	1	12	0	3	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0005	7602	13	6	2	5	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0006	7604	9	6	1	1	0	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0007	7602	9	3	3	0	1	2	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0008	7602	7	0	0	5	0	2	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0009	7603	6	2	2	0	1	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0010	7605	6	1	2	2	1	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0011	7604	5	0	0	5	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0012	7602	4	1	2	1	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0013	7603	3	0	0	2	0	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0014	7604	3	0	0	3	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0015	7604	3	3	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0016	7601	3	0	2	0	0	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0017	7605	3	0	0	2	0	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0018	7603	2	0	0	0	0	2	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0019	7603	2	0	1	0	0	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0020	7601	2	2	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0021	7604	2	2	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0022	7601	2	0	1	0	1	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0023	7602	2	0	0	2	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0024	7605	2	0	0	2	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0025	7604	1	0	0	0	0	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0026	7604	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0027	7605	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0028	7603	1	0	0	0	0	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0029	7605	1	0	0	1	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0030	7605	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0031	7602	1	0	0	1	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0032	7604	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0033	7602	1	0	0	0	0	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0034	7602	1	0	0	0	0	1	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0035	7605	1	0	0	1	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0036	7603	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0037	7605	1	0	0	1	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0038	7604	1	0	1	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0039	7603	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0040	7604	1	0	1	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0041	7605	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0042	7605	1	0	0	1	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0043	7602	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0044	7602	1	0	1	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0045	7603	1	0	1	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0046	7602	1	0	0	1	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0047	7603	1	0	1	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0048	7604	1	0	0	1	0	0	copy fasta	TMEM135	chr11	87032934	87333824