JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM135_chr11_87032934_87333824	0/0	t0049	7603	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0050	7602	1	0	0	1	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0051	7603	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM135_chr11_87032934_87333824	0/0	t0052	7604	1	1	0	0	0	0	copy fasta	TMEM135	chr11	87032934	87333824
TMEM138_chr11_61357374_61374509	1/1	t0001	987	239	78	44	71	8	36	copy fasta	TMEM138	chr11	61357374	61374509
TMEM138_chr11_61357374_61374509	0/0	t0002	987	4	4	0	0	0	0	copy fasta	TMEM138	chr11	61357374	61374509
TMEM138_chr11_61357374_61374509	0/0	t0003	987	2	2	0	0	0	0	copy fasta	TMEM138	chr11	61357374	61374509
TMEM138_chr11_61357374_61374509	0/0	t0004	987	1	1	0	0	0	0	copy fasta	TMEM138	chr11	61357374	61374509
TMEM138_chr11_61357374_61374509	0/0	t0005	987	1	0	0	1	0	0	copy fasta	TMEM138	chr11	61357374	61374509
TMEM138_chr11_61357374_61374509	0/0	t0006	987	1	1	0	0	0	0	copy fasta	TMEM138	chr11	61357374	61374509
TMEM139_chr7_143279958_143293048	1/1	t0001	1725	296	84	59	96	16	39	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	t0002	1725	3	3	0	0	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	t0003	1725	2	0	0	1	0	1	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	t0004	1725	1	0	0	1	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	t0005	1725	1	0	1	0	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM139_chr7_143279958_143293048	0/0	t0006	1725	1	1	0	0	0	0	copy fasta	TMEM139	chr7	143279958	143293048
TMEM140_chr7_135143072_135171215	0/1	t0001	1440	164	25	33	90	4	11	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0002	1440	147	14	35	60	8	30	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	1/0	t0003	1440	35	20	2	10	0	2	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0004	1436	13	11	2	0	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0005	1440	12	12	0	0	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0006	1440	4	4	0	0	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0007	1420	2	1	1	0	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0008	1440	2	2	0	0	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0009	1436	2	2	0	0	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0010	1440	1	1	0	0	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0011	1440	1	0	0	1	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0012	1436	1	0	1	0	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0013	1420	1	1	0	0	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0014	1440	1	1	0	0	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0015	1440	1	0	0	0	0	1	copy fasta	TMEM140	chr7	135143072	135171215
TMEM140_chr7_135143072_135171215	0/0	t0016	1440	1	0	0	1	0	0	copy fasta	TMEM140	chr7	135143072	135171215
TMEM141_chr9_136786344_136798317	1/1	t0001	513	333	78	73	130	15	35	copy fasta	TMEM141	chr9	136786344	136798317
TMEM141_chr9_136786344_136798317	0/0	t0002	469	39	4	0	32	1	2	copy fasta	TMEM141	chr9	136786344	136798317
TMEM141_chr9_136786344_136798317	0/0	t0003	469	7	7	0	0	0	0	copy fasta	TMEM141	chr9	136786344	136798317
TMEM141_chr9_136786344_136798317	0/0	t0004	513	4	4	0	0	0	0	copy fasta	TMEM141	chr9	136786344	136798317
TMEM141_chr9_136786344_136798317	0/0	t0005	513	2	2	0	0	0	0	copy fasta	TMEM141	chr9	136786344	136798317
TMEM141_chr9_136786344_136798317	0/0	t0006	513	2	1	1	0	0	0	copy fasta	TMEM141	chr9	136786344	136798317
TMEM141_chr9_136786344_136798317	0/0	t0007	513	1	0	0	0	0	1	copy fasta	TMEM141	chr9	136786344	136798317
TMEM143_chr19_48327356_48368940	1/1	t0001	884	183	44	36	74	5	22	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0002	884	60	11	17	27	1	4	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0003	884	57	9	11	24	4	9	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0004	884	21	17	3	0	0	1	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0005	884	11	10	1	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0006	884	3	0	0	1	0	2	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0007	884	3	0	3	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0008	887	3	2	0	0	0	1	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0009	884	2	0	0	2	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0010	884	2	2	0	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0011	884	2	0	2	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940