JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM143_chr19_48327356_48368940	0/0	t0012	871	1	0	0	0	0	1	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0013	884	1	1	0	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM143_chr19_48327356_48368940	0/0	t0014	887	1	0	1	0	0	0	copy fasta	TMEM143	chr19	48327356	48368940
TMEM144_chr4_158205486_158260416	0/0	t0001	2168	69	5	18	34	3	9	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0002	2172	23	1	8	10	0	4	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0003	2166	13	2	6	3	1	1	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0004	2173	13	13	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0005	2168	12	3	1	8	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0006	2173	9	9	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0007	2169	9	2	2	2	1	2	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0008	2168	8	2	1	2	2	1	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	1/0	t0009	2173	6	3	2	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0010	2173	6	5	1	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0011	2174	5	5	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0012	2172	5	0	3	1	0	1	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0013	2168	4	1	1	1	1	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0014	2170	4	4	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0015	2167	4	1	0	3	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0016	2170	3	3	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0017	2167	3	0	0	0	1	2	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0018	2166	3	0	2	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0019	2166	3	0	1	0	2	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0020	2172	3	2	1	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0021	2169	3	3	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0022	2169	3	0	2	0	0	1	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0023	2166	3	3	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0024	2168	2	0	0	2	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0025	2173	2	2	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0026	2168	2	0	1	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0027	2167	2	1	0	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0028	2171	2	0	1	0	1	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0029	2168	2	0	0	0	0	2	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0030	2172	2	2	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0031	2169	2	2	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0032	2169	2	2	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0033	2174	2	1	1	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0034	2170	2	1	1	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0035	2166	2	0	0	0	0	2	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0036	2169	2	2	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0037	2170	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0038	2168	1	0	0	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0039	2167	1	0	0	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0040	2172	1	0	0	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0041	2168	1	0	1	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0042	2169	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0043	2169	1	0	0	0	0	1	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/1	t0044	2170	1	0	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0045	2166	1	0	1	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0046	2172	1	0	0	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0047	2168	1	0	0	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416