JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM144_chr4_158205486_158260416	0/0	t0048	2166	1	0	1	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0049	2174	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0050	2175	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0051	2170	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0052	2166	1	0	0	0	0	1	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0053	2168	1	0	0	0	0	1	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0054	2166	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0055	2167	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0056	2171	1	0	0	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0057	2171	1	0	0	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0058	2169	1	0	0	0	0	1	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0059	2169	1	0	0	0	1	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0060	2172	1	0	1	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0061	2172	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0062	2170	1	0	1	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0063	2173	1	0	0	0	0	1	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0064	2169	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0065	2174	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0066	2170	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0067	2171	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0068	2168	1	0	0	0	1	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0069	2169	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	t0070	2168	1	1	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM145_chr19_42308309_42330064	1/1	t0001	316	220	84	54	40	10	30	copy fasta	TMEM145	chr19	42308309	42330064
TMEM147_chr19_35540626_35552526	0/1	t0001	194	279	45	50	137	13	33	copy fasta	TMEM147	chr19	35540626	35552526
TMEM147_chr19_35540626_35552526	1/0	t0002	194	144	49	28	51	1	14	copy fasta	TMEM147	chr19	35540626	35552526
TMEM147_chr19_35540626_35552526	0/0	t0003	194	1	0	0	0	0	1	copy fasta	TMEM147	chr19	35540626	35552526
TMEM14A_chr6_52666113_52691588	1/1	t0001	689	394	98	75	172	12	35	copy fasta	TMEM14A	chr6	52666113	52691588
TMEM14A_chr6_52666113_52691588	0/0	t0002	689	30	0	5	19	1	5	copy fasta	TMEM14A	chr6	52666113	52691588
TMEM14A_chr6_52666113_52691588	0/0	t0003	689	1	0	0	0	1	0	copy fasta	TMEM14A	chr6	52666113	52691588
TMEM14A_chr6_52666113_52691588	0/0	t0004	689	1	0	0	1	0	0	copy fasta	TMEM14A	chr6	52666113	52691588
TMEM14B_chr6_10742805_10761981	1/1	t0001	585	394	60	77	195	16	44	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14B_chr6_10742805_10761981	0/0	t0002	586	28	25	1	2	0	0	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14B_chr6_10742805_10761981	0/0	t0003	587	8	8	0	0	0	0	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14B_chr6_10742805_10761981	0/0	t0004	585	6	6	0	0	0	0	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14B_chr6_10742805_10761981	0/0	t0005	585	1	0	0	1	0	0	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14B_chr6_10742805_10761981	0/0	t0006	585	1	0	1	0	0	0	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14B_chr6_10742805_10761981	0/0	t0007	585	1	0	1	0	0	0	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14B_chr6_10742805_10761981	0/0	t0008	586	1	1	0	0	0	0	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14C_chr6_10718070_10736127	0/0	t0001	678	165	3	44	87	8	23	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	1/1	t0002	678	158	13	30	93	5	15	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	t0003	678	53	42	2	8	0	1	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	t0004	678	25	22	3	0	0	0	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	t0005	678	16	1	2	5	1	7	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	t0006	678	8	8	0	0	0	0	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	t0007	678	5	5	0	0	0	0	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	t0008	678	4	4	0	0	0	0	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	t0009	690	1	0	0	1	0	0	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	t0010	678	1	1	0	0	0	0	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	t0011	678	1	0	1	0	0	0	copy fasta	TMEM14C	chr6	10718070	10736127