Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRSK2_chr11_1384934_1467689	0/0	t0039	2316	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0040	2316	1	0	0	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0041	2318	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0042	2321	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0043	2340	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0044	2319	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0045	2319	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0046	2319	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0047	2319	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0048	2320	1	0	0	0	1	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0049	2320	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0050	2318	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0051	2318	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0052	2318	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0053	2318	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0054	2318	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	1/0	t0055	2318	1	0	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0056	2318	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0057	2321	1	0	0	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0058	2321	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0059	2321	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0060	2321	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0061	2319	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0062	2319	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0063	2319	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0064	2319	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0065	2317	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0066	2318	1	0	0	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0067	2320	1	0	0	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0068	2320	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0069	2320	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0070	2320	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0071	2318	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0072	2318	1	0	0	1	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0073	2319	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0074	2321	1	0	0	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0075	2319	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0076	2319	1	0	1	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0077	2323	1	1	0	0	0	0	copy fasta	BRSK2	chr11	1384934	1467689
BRSK2_chr11_1384934_1467689	0/0	t0078	2323	1	0	0	0	0	1	copy fasta	BRSK2	chr11	1384934	1467689
BRWD1_chr21_39180482_39318632	1/0	t0001	10919	57	0	8	39	1	8	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	t0002	10908	42	9	2	23	2	6	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	t0003	10914	32	0	7	20	1	4	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	t0004	10914	28	6	11	5	2	4	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/1	t0005	10910	23	3	7	7	2	3	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	t0006	10917	23	1	2	13	0	7	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	t0007	10910	16	14	2	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	t0008	10915	10	10	0	0	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	t0009	10902	9	0	0	9	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	t0010	10910	8	1	5	0	1	1	copy fasta	BRWD1	chr21	39180482	39318632