JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM14C_chr6_10718070_10736127	0/0	t0012	678	1	1	0	0	0	0	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM150A_chr2_85593547_85607698	0/0	t0001	738	192	75	23	75	2	17	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150A_chr2_85593547_85607698	1/1	t0002	738	190	21	53	83	8	23	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150A_chr2_85593547_85607698	0/0	t0003	738	2	0	2	0	0	0	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150A_chr2_85593547_85607698	0/0	t0004	738	1	0	0	1	0	0	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150A_chr2_85593547_85607698	0/0	t0005	738	1	0	0	1	0	0	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150B_chr19_55307801_55330341	1/0	t0001	282	223	41	33	124	1	23	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150B_chr19_55307801_55330341	0/1	t0002	282	127	52	35	14	5	20	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150B_chr19_55307801_55330341	0/0	t0003	282	1	1	0	0	0	0	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150B_chr19_55307801_55330341	0/0	t0004	282	1	0	0	0	0	1	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150C_chr4_82478176_82566988	1/0	t0001	2429	67	5	14	33	2	12	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0002	2435	33	1	4	17	3	8	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0003	2430	31	11	6	11	0	3	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0004	2429	18	5	7	3	0	3	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0005	2433	12	12	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0006	2425	10	10	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0007	2432	9	7	0	0	2	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0008	2435	8	0	5	0	3	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0009	2430	8	8	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0010	2429	5	0	0	4	0	1	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0011	2431	5	1	2	0	2	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0012	2435	4	4	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0013	2434	4	0	1	0	1	2	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0014	2430	4	4	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0015	2428	3	2	1	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0016	2429	3	0	0	3	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0017	2436	2	2	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/1	t0018	2435	2	0	0	0	1	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0019	2425	2	2	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0020	2431	2	0	0	1	0	1	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0021	2429	2	2	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0022	2429	2	0	2	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0023	2429	2	2	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0024	2436	1	0	0	1	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0025	2435	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0026	2434	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0027	2436	1	0	0	0	0	1	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0028	2435	1	0	0	0	0	1	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0029	2436	1	0	0	1	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0030	2436	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0031	2436	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0032	2432	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0033	2434	1	0	1	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0034	2432	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0035	2431	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0036	2432	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0037	2428	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0038	2430	1	0	0	1	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0039	2429	1	0	1	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	t0040	2429	1	0	0	1	0	0	copy fasta	TMEM150C	chr4	82478176	82566988