JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM150C_chr4_82478176_82566988	0/0	t0041	2429	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM151A_chr11_66286894_66301664	1/1	t0001	1132	179	35	28	73	7	34	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0002	1133	94	6	18	57	5	8	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0003	1132	53	0	18	33	1	1	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0004	1132	34	1	1	32	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0005	1131	16	10	2	3	0	1	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0006	1131	13	6	6	0	1	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0007	1132	13	9	2	1	1	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0008	1132	8	4	3	0	1	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0009	1133	6	6	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0010	1131	5	0	0	5	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0011	1129	5	5	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0012	1128	3	3	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0013	1133	3	3	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0014	1133	2	0	0	2	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0015	1132	2	2	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0016	1131	1	0	1	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0017	1131	1	1	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0018	1132	1	1	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0019	1132	1	1	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0020	1132	1	0	1	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0021	1132	1	1	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0022	1132	1	1	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0023	1133	1	0	1	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0024	1132	1	1	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0025	1132	1	0	1	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0026	1132	1	0	0	1	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0027	1132	1	1	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0028	1133	1	1	0	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	t0029	1132	1	0	0	1	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151B_chr6_44265450_44284444	0/0	t0001	3215	113	13	32	49	6	13	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0002	3215	76	2	12	53	0	9	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0003	3215	62	9	2	44	5	2	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0004	3211	28	26	0	0	0	2	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0005	3215	16	1	6	2	3	4	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/1	t0006	3217	11	1	1	7	0	1	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0007	3211	6	0	1	4	0	1	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0008	3219	5	5	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0009	3219	5	0	0	5	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0010	3213	5	1	4	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0011	3215	5	0	2	0	0	3	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0012	3215	4	0	2	2	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0013	3214	4	0	0	4	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0014	3215	4	4	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0015	3213	4	4	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0016	3215	4	0	0	0	0	4	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0017	3217	4	4	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0018	3215	3	0	2	0	1	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0019	3211	3	0	0	3	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0020	3217	3	2	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444