JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM151B_chr6_44265450_44284444	0/0	t0021	3215	3	3	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0022	3215	2	0	2	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0023	3217	2	0	0	2	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0024	3209	2	1	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0025	3215	2	1	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0026	3217	2	2	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0027	3215	2	0	0	1	0	1	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0028	3215	2	0	0	2	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0029	3215	2	0	2	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0030	3211	1	0	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0031	3215	1	0	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0032	3215	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0033	3217	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0034	3211	1	1	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0035	3215	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	1/0	t0036	3211	1	0	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0037	3209	1	1	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0038	3217	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0039	3215	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0040	3217	1	1	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0041	3215	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0042	3209	1	1	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0043	3213	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0044	3215	1	0	0	0	0	1	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0045	3215	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0046	3209	1	1	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0047	3215	1	0	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0048	3217	1	1	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0049	3215	1	0	0	0	0	1	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0050	3213	1	0	0	0	0	1	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0051	3215	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0052	3211	1	1	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0053	3215	1	0	0	0	0	1	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0054	3215	1	0	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	t0055	3215	1	0	0	0	1	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM154_chr4_152613628_152684997	0/0	t0001	9999	105	32	17	45	6	5	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0002	9999	27	3	11	3	4	6	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/1	t0003	9997	24	1	4	11	1	6	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0004	10000	18	0	4	9	0	5	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0005	9983	8	3	0	5	0	0	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0006	9999	8	0	0	0	2	6	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0007	9999	7	5	2	0	0	0	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0008	10001	7	4	0	0	2	1	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0009	10001	7	0	0	6	0	1	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0010	9997	6	6	0	0	0	0	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0011	9983	5	5	0	0	0	0	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0012	9983	5	5	0	0	0	0	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0013	9997	4	0	3	0	0	1	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0014	9999	3	0	1	0	1	1	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	t0015	9985	3	3	0	0	0	0	copy fasta	TMEM154	chr4	152613628	152684997