JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM156_chr4_38961744_39037409	1/0	t0001	1033	163	29	35	66	7	25	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0002	1033	88	22	18	42	0	6	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0003	1034	54	7	14	27	0	6	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0004	1032	42	5	2	27	1	7	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0005	1036	20	18	2	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0006	1034	6	1	1	4	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0007	1033	2	2	0	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0008	1034	2	2	0	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0009	1033	2	2	0	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0010	1034	1	0	0	1	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0011	1033	1	1	0	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0012	1033	1	0	0	1	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0013	1034	1	1	0	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0014	1033	1	0	0	1	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	t0015	1032	1	0	0	1	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/1	t0016	1033	1	0	0	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM158_chr3_45219466_45231287	0/1	t0001	920	231	29	55	102	14	30	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	1/0	t0002	920	125	53	18	40	1	12	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0003	920	25	0	1	22	1	1	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0004	920	8	7	1	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0005	920	5	0	0	5	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0006	920	4	4	0	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0007	920	3	2	1	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0008	920	2	0	2	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0009	920	2	0	2	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0010	920	1	0	0	0	0	1	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0011	920	1	0	0	1	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0012	920	1	0	0	1	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0013	920	1	1	0	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	t0014	920	1	0	0	1	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM160_chr19_47040909_47053624	1/1	t0001	89	444	100	76	198	18	50	copy fasta	TMEM160	chr19	47040909	47053624
TMEM161A_chr19_19114169_19143478	0/1	t0001	812	242	52	51	104	10	24	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	1/0	t0002	812	41	6	11	13	1	9	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0003	812	25	14	4	0	3	4	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0004	812	12	0	0	12	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0005	812	11	1	2	6	0	2	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0006	812	6	6	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0007	812	5	5	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0008	812	4	4	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0009	812	1	0	0	1	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0010	812	1	0	1	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0011	812	1	0	0	0	0	1	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0012	812	1	1	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0013	812	1	0	1	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	t0014	798	1	1	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161B_chr5_88190047_88273845	0/0	t0001	1287	104	11	23	55	9	6	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	1/0	t0002	1287	80	26	7	43	1	2	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/1	t0003	1287	61	30	13	1	2	14	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	t0004	1287	13	11	2	0	0	0	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	t0005	1287	12	0	4	5	0	3	copy fasta	TMEM161B	chr5	88190047	88273845