JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM161B_chr5_88190047_88273845	0/0	t0006	1287	4	0	0	1	0	3	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	t0007	1287	2	0	0	0	0	2	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	t0008	1287	1	0	1	0	0	0	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	t0009	1287	1	0	1	0	0	0	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	t0010	1287	1	0	1	0	0	0	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	t0011	1287	1	0	1	0	0	0	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	t0012	1287	1	0	1	0	0	0	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	t0013	1287	1	0	0	1	0	0	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM163_chr2_134450759_134724000	0/0	t0001	1022	68	24	11	24	1	8	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0002	1024	41	20	11	4	1	5	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/1	t0003	1022	36	1	9	19	1	5	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0004	1024	27	5	2	14	1	5	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0005	1024	16	15	1	0	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	1/0	t0006	1023	14	1	8	2	1	1	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0007	1023	8	1	4	0	1	2	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0008	1022	2	0	0	2	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0009	1024	1	1	0	0	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0010	1024	1	1	0	0	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0011	1022	1	1	0	0	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0012	1022	1	1	0	0	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0013	1022	1	1	0	0	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0014	1022	1	1	0	0	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0015	1023	1	1	0	0	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0016	1024	1	0	0	1	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0017	1024	1	1	0	0	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM163_chr2_134450759_134724000	0/0	t0018	1022	1	1	0	0	0	0	copy fasta	TMEM163	chr2	134450759	134724000
TMEM164_chrX_109998114_110182788	0/1	t0001	4676	73	1	13	50	0	8	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	1/0	t0002	4677	37	1	16	6	4	9	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0003	4677	29	25	3	0	1	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0004	4677	12	11	1	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0005	4677	6	0	2	4	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0006	4676	6	0	0	6	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0007	4677	4	3	1	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0008	4676	3	0	0	2	0	1	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0009	4677	3	3	0	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0010	4677	3	2	1	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0011	4677	2	2	0	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0012	4678	2	1	1	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0013	4678	2	0	0	1	0	1	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0014	4677	2	2	0	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0015	4675	1	0	0	1	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0016	4673	1	0	0	1	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0017	4680	1	0	0	1	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0018	4676	1	0	0	1	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0019	4677	1	0	0	0	0	1	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0020	4675	1	0	0	1	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0021	4677	1	1	0	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0022	4677	1	1	0	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0023	4678	1	1	0	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0024	4677	1	1	0	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788