JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM164_chrX_109998114_110182788	0/0	t0025	4677	1	1	0	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0026	4673	1	0	1	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0027	4677	1	1	0	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	t0028	4676	1	1	0	0	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM165_chr4_55390957_55431175	1/1	t0001	957	140	48	21	51	6	12	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0002	955	128	17	31	68	2	10	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0003	957	80	4	15	36	7	18	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0004	957	9	9	0	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0005	957	7	7	0	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0006	957	4	4	0	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0007	957	4	1	2	0	1	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0008	957	2	1	1	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0009	957	2	2	0	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0010	989	1	0	0	1	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0011	957	1	0	0	1	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0012	957	1	0	1	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0013	955	1	0	0	1	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0014	955	1	0	1	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	t0015	957	1	1	0	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM167A_chr5_83047846_83082394	1/0	t0001	4310	145	24	24	79	7	10	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0002	4309	59	22	5	26	1	5	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/1	t0003	4309	47	8	15	8	3	12	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0004	4310	32	2	9	8	4	9	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0005	4309	19	0	0	19	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0006	4308	17	14	3	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0007	4307	6	6	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0008	4310	5	0	3	2	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0009	4308	4	3	1	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0010	4310	3	0	0	3	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0011	4309	2	2	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0012	4310	2	2	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0013	4310	2	0	0	2	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0014	4309	1	1	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0015	4310	1	0	0	1	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0016	4356	1	0	0	0	0	1	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0017	4309	1	1	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0018	4309	1	1	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0019	4309	1	1	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0020	4309	1	0	1	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0021	4310	1	0	0	1	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0022	4310	1	1	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0023	4310	1	0	0	1	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0024	4310	1	0	0	1	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0025	4310	1	0	0	1	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0026	4310	1	0	0	1	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0027	4310	1	1	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0028	4310	1	0	1	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0029	4310	1	0	0	1	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0030	4310	1	0	0	0	1	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0031	4310	1	1	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394