JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM167A_chr5_83047846_83082394	0/0	t0032	4309	1	1	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0033	4308	1	1	0	0	0	0	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	t0034	4310	1	0	0	0	0	1	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167B_chr1_109085764_109101934	1/1	t0001	2545	313	53	67	153	13	25	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0002	2545	31	25	3	0	3	0	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0003	2545	19	2	3	6	2	6	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0004	2545	9	9	0	0	0	0	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0005	2545	7	3	1	0	0	3	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0006	2545	3	0	0	0	0	3	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0007	2545	3	0	0	3	0	0	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0008	2545	2	0	0	2	0	0	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0009	2545	2	2	0	0	0	0	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0010	2545	1	0	0	0	0	1	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0011	2545	1	0	0	1	0	0	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0012	2545	1	0	0	1	0	0	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0013	2545	1	0	0	1	0	0	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0014	2545	1	1	0	0	0	0	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0015	2545	1	0	0	1	0	0	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM167B_chr1_109085764_109101934	0/0	t0016	2545	1	1	0	0	0	0	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM168_chr7_112757377_112795393	1/0	t0001	5183	126	12	24	64	5	20	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0002	5181	44	18	5	7	3	11	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0003	5175	34	7	13	10	1	3	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0004	5182	8	8	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0005	5181	7	6	1	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0006	5175	6	6	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0007	5178	5	4	1	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0008	5185	5	1	3	0	0	1	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0009	5182	4	3	1	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0010	5181	3	3	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0011	5183	3	3	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/1	t0012	5183	2	0	0	0	1	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0013	5183	2	0	0	2	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0014	5183	2	0	2	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0015	5183	2	2	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0016	5181	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0017	5238	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0018	5181	1	0	1	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0019	5185	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0020	5181	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0021	5181	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0022	5183	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0023	5181	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0024	5181	1	0	1	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0025	5181	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0026	5182	1	1	0	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0027	5176	1	0	0	1	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0028	5175	1	0	1	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0029	5183	1	0	0	1	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0030	5183	1	0	1	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	t0031	5182	1	0	0	1	0	0	copy fasta	TMEM168	chr7	112757377	112795393